Factsheet for GSMUA_Achr5P05950_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P18730_001	Banana	nucleus	82.42	73.29
Zm00001d050357_P005	Maize	plasma membrane	60.07	60.97
EES15014	Sorghum	nucleus	60.44	60.66
VIT_14s0006g01020.t01	Wine grape	nucleus	59.71	60.59
TraesCS2A01G060200.1	Wheat	nucleus	57.88	56.83
TraesCS2B01G073800.1	Wheat	nucleus	57.88	56.63
Os08t0427900-01	Rice	nucleus	58.97	56.29
TraesCS2D01G059800.1	Wheat	nucleus	57.88	56.23
Solyc04g014460.2.1	Tomato	nucleus	55.31	55.51
PGSC0003DMT400060737	Potato	nucleus	55.31	54.71
KRG97938	Soybean	nucleus	59.71	54.7
PGSC0003DMT400040562	Potato	nucleus	56.41	54.61
Solyc11g011130.1.1	Tomato	nucleus	56.04	54.06
KRH30937	Soybean	nucleus	58.97	54.03
GSMUA_Achr10P...	Banana	nucleus	46.52	53.14
Os06t0256200-01	Rice	nucleus	56.04	52.04
GSMUA_Achr6P23530_001	Banana	nucleus	45.05	51.46
GSMUA_AchrUn_...	Banana	nucleus	45.05	51.46
EER89547	Sorghum	nucleus	54.58	48.53
TraesCS7D01G207200.1	Wheat	nucleus	53.11	48.17
HORVU2Hr1G011700.2	Barley	nucleus	58.97	47.92
TraesCS7A01G204100.1	Wheat	nucleus	52.75	47.84
TraesCS7B01G111100.1	Wheat	nucleus	52.75	47.84
HORVU7Hr1G041520.2	Barley	nucleus	52.38	47.51
CDY01711	Canola	nucleus	49.82	46.42
AT5G37720.1	Thale cress	nucleus	48.35	45.83
Bra004158.1-P	Field mustard	nucleus, plastid	47.99	45.49
CDY49635	Canola	nucleus, plastid	47.99	45.49
CDY07496	Canola	nucleus, plastid	47.99	45.49
Zm00001d037352_P001	Maize	plasma membrane	50.92	45.42
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	43.22	45.38
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	43.22	45.38
AT1G66260.1	Thale cress	nucleus	47.62	44.07
GSMUA_Achr6P15310_001	Banana	nucleus	35.53	41.28

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	ncoils:Coil	InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr5G05950_001	EnsemblPlants:GSMUA_Achr5P05950_001	EnsemblPlants:GSMUA_Achr5T05950_001	InterPro:IPR000504
InterPro:IPR012677	UniProt:M0SW24	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF13865	PFscan:PS50102
PANTHER:PTHR19965	PANTHER:PTHR19965:SF33	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM01218
SUPFAM:SSF54928	UniParc:UPI0002950034	SEG:seg	:	:	:

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G05950_001]

Coordinates

chr5:-:4429945..4438641

Molecular Weight (calculated)

29575.2 Da

IEP (calculated)

11.017

GRAVY (calculated)

-0.568

Length

273 amino acids

Sequence
(BLAST)

001: MATSLDMSLD DLIKNRTGSQ RGRGRGPGRG LLKGSYFGTG ALTSNLWSAY DIGGILISFS RTKDMIWRHD LFDDSMVAAG ISGIETGTKL YISNLDYGVS
101: NEDIRELFSE VGDLKRFAVH YDRTGRPSGS AEVVYTRRSD AMAALKRYNN VQLDGKPMKI EVIGTNLGLP VTPRVNVLGG PNGRGKRTVV MTPQFVRGGS
201: RSFNRASGTN RGGFQRGRGR GRGRGSSVRG IGRGSVRGIG RGRGSGRMQN VEKSADDLDK ELDTYHAEAM NTS

Best Arabidopsis Sequence Match ( AT5G37720.2 )
(BLAST)

001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: VRGGRGGRGP APTVSRRLPI HNQQGGGMRG GRGGFRARGR GNGGRGRGGG RGNGKKPVEK SAADLDKDLE SYHADAMNTS

Arabidopsis Description

ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.