CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 6
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004158.1-P	Field mustard	nucleus, plastid	100.0	100.0
CDY07496	Canola	nucleus, plastid	100.0	100.0
AT1G66260.1	Thale cress	nucleus	75.69	73.9
CDY01711	Canola	nucleus	64.24	63.14
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	53.82	59.62
VIT_14s0006g01020.t01	Wine grape	nucleus	52.43	56.13
Solyc04g014460.2.1	Tomato	nucleus	51.74	54.78
KRG97938	Soybean	nucleus	55.9	54.03
PGSC0003DMT400060737	Potato	nucleus	51.74	53.99
KRH30937	Soybean	nucleus	55.56	53.69
Solyc11g011130.1.1	Tomato	nucleus	52.43	53.36
PGSC0003DMT400040562	Potato	nucleus	52.08	53.19
GSMUA_Achr5P05950_001	Banana	nucleus	45.49	47.99
Zm00001d050357_P005	Maize	plasma membrane	43.4	46.47
EES15014	Sorghum	nucleus	43.4	45.96
GSMUA_Achr2P18730_001	Banana	nucleus	48.96	45.93
TraesCS2B01G073800.1	Wheat	nucleus	43.4	44.8
TraesCS2A01G060200.1	Wheat	nucleus	43.06	44.6
TraesCS2D01G059800.1	Wheat	nucleus	43.06	44.13
Os06t0256200-01	Rice	nucleus	44.1	43.2
CDY09236	Canola	nucleus	32.29	42.66
Os08t0427900-01	Rice	nucleus	42.01	42.31
TraesCS7D01G207200.1	Wheat	nucleus	43.06	41.2
TraesCS7A01G204100.1	Wheat	nucleus	43.06	41.2
HORVU7Hr1G041520.2	Barley	nucleus	42.71	40.86
TraesCS7B01G111100.1	Wheat	nucleus	42.71	40.86
CDX80213	Canola	nucleus	33.33	40.85
EER89547	Sorghum	nucleus	43.4	40.72
CDY31583	Canola	nucleus	33.33	40.17
CDY10442	Canola	nucleus	36.81	37.99
HORVU2Hr1G011700.2	Barley	nucleus	43.75	37.5
CDX80828	Canola	nucleus	37.5	37.37
CDY55544	Canola	nucleus	37.5	36.99
CDY40364	Canola	nucleus	35.42	36.82
Zm00001d037352_P001	Maize	plasma membrane	37.15	34.97

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	GO:A0A078F288	UniProt:A0A078F288	ProteinID:CDY07496.1	EnsemblPlants:CDY49635
ProteinID:CDY49635	ProteinID:CDY49635.1	ncoils:Coil	InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00093499001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF13865	PFscan:PS50102	PANTHER:PTHR19965	PANTHER:PTHR19965:SF33	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928	UniParc:UPI00025414F2	SEG:seg

Description

BnaCnng17870DBnaA07g25750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F288]

Coordinates

chrLK032849:+:69232..71787

Molecular Weight (calculated)

30779.9 Da

IEP (calculated)

11.530

GRAVY (calculated)

-0.686

Length

288 amino acids

Sequence
(BLAST)

001: MADSLSMSLD EMVKRSKAAK KSAGKGVSRG GAKGAGRGAG GPVRRGPLAV KARPSSFSNK ASSRIWDLLS LNRRKKNLPW QNGLFEESMR SVGVTGIEVG
101: TTVYVTNLDQ GVTNEDIREL FGEIGEMKRY AIHYDQNGRP NGSAEVVYMR RSDAFQAMKR YNNVLLDGRS MKLEILGGNN EVAPVAARVN VTGLNGRMKR
201: TVSIGQGIRG GRGRGRSAAP SMRRLPIGNQ QGGGVRSGRG GFRGRGRGQA GGGRGNKGGR GGKKAVEKSA EELDKDLETY HAEAMNIS

Best Arabidopsis Sequence Match ( AT1G66260.2 )
(BLAST)

001: MSDALNMTLD EIVKKSKSER SAAARSGGKG VSRKSGRGRG GPNGVVGGGR GGGPVRRGPL AVNTRPSSSF SINKLARRKR SLPWQNQNDL YEETLRAVGV
101: SGVEVGTTVY ITNLDQGVTN EDIRELYAEI GELKRYAIHY DKNGRPSGSA EVVYMRRSDA IQAMRKYNNV LLDGRPMKLE ILGGNTESAP VAARVNVTGL
201: NGRMKRSVFI GQGVRGGRVG RGRGSGPSGR RLPLQQNQQG GVTAGRGGFR GRGRGNGGGR GNKSGGRGGK KPVEKSAADL DKDLESYHAE AMNIS

Arabidopsis Description

ALY3THO complex subunit 4C [Source:UniProtKB/Swiss-Prot;Acc:Q94EH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.