Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
25464976
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400060737 | Potato | nucleus | 95.96 | 94.57 |
| Solyc11g011130.1.1 | Tomato | nucleus | 81.25 | 78.09 |
| VIT_14s0006g01020.t01 | Wine grape | nucleus | 65.44 | 66.17 |
| KRG97938 | Soybean | nucleus | 63.24 | 57.72 |
| KRH30937 | Soybean | nucleus | 62.87 | 57.38 |
| GSMUA_Achr5P05950_001 | Banana | nucleus | 55.51 | 55.31 |
| AT5G37720.1 | Thale cress | nucleus | 57.35 | 54.17 |
| CDY01711 | Canola | nucleus | 57.72 | 53.58 |
| Zm00001d050357_P005 | Maize | plasma membrane | 51.84 | 52.42 |
| EES15014 | Sorghum | nucleus | 52.21 | 52.21 |
| GSMUA_Achr2P18730_001 | Banana | nucleus | 58.82 | 52.12 |
| AT1G66260.1 | Thale cress | nucleus | 56.25 | 51.86 |
| CDY49635 | Canola | nucleus, plastid | 54.78 | 51.74 |
| CDY07496 | Canola | nucleus, plastid | 54.78 | 51.74 |
| Bra004158.1-P | Field mustard | nucleus, plastid | 54.78 | 51.74 |
| Os06t0256200-01 | Rice | nucleus | 55.51 | 51.36 |
| CDX74565 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 48.9 | 51.15 |
| Bra028145.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 48.9 | 51.15 |
| TraesCS2D01G059800.1 | Wheat | nucleus | 50.37 | 48.75 |
| TraesCS2B01G073800.1 | Wheat | nucleus | 50.0 | 48.75 |
| TraesCS2A01G060200.1 | Wheat | nucleus | 49.63 | 48.56 |
| Os08t0427900-01 | Rice | nucleus | 49.26 | 46.85 |
| EER89547 | Sorghum | nucleus | 52.57 | 46.58 |
| TraesCS7D01G207200.1 | Wheat | nucleus | 51.47 | 46.51 |
| TraesCS7A01G204100.1 | Wheat | nucleus | 51.1 | 46.18 |
| TraesCS7B01G111100.1 | Wheat | nucleus | 51.1 | 46.18 |
| HORVU7Hr1G041520.2 | Barley | nucleus | 51.1 | 46.18 |
| Solyc11g073280.1.1 | Tomato | nucleus | 41.91 | 45.42 |
| Solyc10g086400.1.1 | Tomato | nucleus | 37.5 | 42.68 |
| Zm00001d037352_P001 | Maize | plasma membrane | 47.79 | 42.48 |
| HORVU2Hr1G011700.2 | Barley | nucleus | 51.47 | 41.67 |
Protein Annotations
| MapMan:16.11.1.2 | Gene3D:3.30.70.330 | ncoils:Coil | InterPro:FoP_C | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:K4BPV0 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF13865 | PFscan:PS50102 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF33 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 | EnsemblPlantsGene:Solyc04g014460.2 | EnsemblPlants:Solyc04g014460.2.1 |
| UniParc:UPI0002766603 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:4691348..4695742
Molecular Weight (calculated)
29012.4 Da
IEP (calculated)
11.684
GRAVY (calculated)
-0.797
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLDMSLDD MIKSRRNNEK GGRGQGRARR GRGQGGSVRG GRTTGALRKG ALGVNARPSA NRIAKSFHRT KNLPWQNGLL EDSLRAAGIS SGLESGTKVY
101: VSNLDVGVTN SDIRELFAEM GELIRYAIHY DKNGRPSGSA EVVFARRSDA YQALKRYNNV QLDGKPMKIE IVAPKPDIPL SARVDVGRAN GRRTVVMMPG
201: SVRGRGGASA ANRGSSQRGH GGLGNASGRG RGRGRGGRGR GGRGRKNGVE KSAEDLDKEL ENYHASADAM QT
101: VSNLDVGVTN SDIRELFAEM GELIRYAIHY DKNGRPSGSA EVVFARRSDA YQALKRYNNV QLDGKPMKIE IVAPKPDIPL SARVDVGRAN GRRTVVMMPG
201: SVRGRGGASA ANRGSSQRGH GGLGNASGRG RGRGRGGRGR GGRGRKNGVE KSAEDLDKEL ENYHASADAM QT
001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: VRGGRGGRGP APTVSRRLPI HNQQGGGMRG GRGGFRARGR GNGGRGRGGG RGNGKKPVEK SAADLDKDLE SYHADAMNTS
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: VRGGRGGRGP APTVSRRLPI HNQQGGGMRG GRGGFRARGR GNGGRGRGGG RGNGKKPVEK SAADLDKDLE SYHADAMNTS
Arabidopsis Description
ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.