Factsheet for PGSC0003DMT400060737

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g014460.2.1	Tomato	nucleus	94.57	95.96
PGSC0003DMT400040562	Potato	nucleus	81.52	79.79
VIT_14s0006g01020.t01	Wine grape	nucleus	64.13	65.8
KRG97938	Soybean	nucleus	60.87	56.38
KRH30937	Soybean	nucleus	60.14	55.7
GSMUA_Achr5P05950_001	Banana	nucleus	54.71	55.31
AT5G37720.1	Thale cress	nucleus	57.25	54.86
CDY01711	Canola	nucleus	57.97	54.61
AT1G66260.1	Thale cress	nucleus	56.52	52.88
GSMUA_Achr2P18730_001	Banana	nucleus	57.97	52.12
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	48.91	51.92
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	48.91	51.92
Bra004158.1-P	Field mustard	nucleus, plastid	53.99	51.74
CDY07496	Canola	nucleus, plastid	53.99	51.74
CDY49635	Canola	nucleus, plastid	53.99	51.74
Zm00001d050357_P005	Maize	plasma membrane	50.36	51.67
EES15014	Sorghum	nucleus	50.72	51.47
Os06t0256200-01	Rice	nucleus	53.99	50.68
TraesCS2A01G060200.1	Wheat	nucleus	48.55	48.2
TraesCS2D01G059800.1	Wheat	nucleus	48.91	48.04
TraesCS2B01G073800.1	Wheat	nucleus	48.55	48.03
Os08t0427900-01	Rice	nucleus	48.55	46.85
HORVU7Hr1G041520.2	Barley	nucleus	50.72	46.51
TraesCS7D01G207200.1	Wheat	nucleus	50.72	46.51
TraesCS7A01G204100.1	Wheat	nucleus	50.36	46.18
TraesCS7B01G111100.1	Wheat	nucleus	50.36	46.18
EER89547	Sorghum	nucleus	51.09	45.93
PGSC0003DMT400049444	Potato	cytosol	37.32	41.7
Zm00001d037352_P001	Maize	plasma membrane	46.01	41.5
HORVU2Hr1G011700.2	Barley	nucleus	50.0	41.07
PGSC0003DMT400085575	Potato	nucleus, plastid	30.8	39.17
PGSC0003DMT400049442	Potato	nucleus	28.99	35.4

Protein Annotations

EntrezGene:102593463	MapMan:16.11.1.2	Gene3D:3.30.70.330	ncoils:Coil	InterPro:FoP_C	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1C6C2
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF13865	EnsemblPlantsGene:PGSC0003DMG400023623	PGSC:PGSC0003DMG400023623	EnsemblPlants:PGSC0003DMT400060737
PFscan:PS50102	PANTHER:PTHR19965	PANTHER:PTHR19965:SF33	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SMART:SM01218	SUPFAM:SSF54928	UniParc:UPI000294A056	RefSeq:XP_006346755.1	SEG:seg	:

Description

ALY protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023623]

Coordinates

chr4:+:8325178..8331436

Molecular Weight (calculated)

29349.8 Da

IEP (calculated)

11.747

GRAVY (calculated)

-0.839

Length

276 amino acids

Sequence
(BLAST)

001: MASLDMTLDD MIKSRRNSEK GGRGQGRARR GRGQGGSVRG GRTTGAPHKG ALGVNARPSA NRIAKSFRRT KNLPWQNGLL EDSLRAAGVS SGLETGTKVY
101: VSNLDVGVTN SDIRELFAEM GELIRYAIHY DKNGRPSGSA EVVFARRSDA YQALKRYNNV QLDGKPMKIE IVAPKPDIPL SARVDVGRAN GRRTVVMMPG
201: SARGRGGASA ANRGSSQRGH GGLGNAPGRG RGRGRGRGRG GRGRGGRGSK NGVEKSAEDL DKELENYHAN ADAMQT

Best Arabidopsis Sequence Match ( AT5G37720.2 )
(BLAST)

001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: VRGGRGGRGP APTVSRRLPI HNQQGGGMRG GRGGFRARGR GNGGRGRGGG RGNGKKPVEK SAADLDKDLE SYHADAMNTS

Arabidopsis Description

ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.