CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	golgi, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	golgi
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30937	Soybean	nucleus	95.97	95.97
VIT_14s0006g01020.t01	Wine grape	nucleus	66.44	73.61
PGSC0003DMT400040562	Potato	nucleus	60.74	64.18
Solyc11g011130.1.1	Tomato	nucleus	60.4	63.6
Solyc04g014460.2.1	Tomato	nucleus	57.72	63.24
PGSC0003DMT400060737	Potato	nucleus	56.38	60.87
GSMUA_Achr5P05950_001	Banana	nucleus	54.7	59.71
AT5G37720.1	Thale cress	nucleus	56.38	58.33
GSMUA_Achr2P18730_001	Banana	nucleus	57.72	56.03
CDY01711	Canola	nucleus	55.03	55.97
Bra004158.1-P	Field mustard	nucleus, plastid	54.03	55.9
CDY07496	Canola	nucleus, plastid	54.03	55.9
CDY49635	Canola	nucleus, plastid	54.03	55.9
EES15014	Sorghum	nucleus	50.34	55.15
Zm00001d050357_P005	Maize	plasma membrane	49.66	55.02
AT1G66260.1	Thale cress	nucleus	54.36	54.92
Os06t0256200-01	Rice	nucleus	52.01	52.72
TraesCS2D01G059800.1	Wheat	nucleus	49.66	52.67
TraesCS2A01G060200.1	Wheat	nucleus	48.99	52.52
TraesCS2B01G073800.1	Wheat	nucleus	48.99	52.33
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	45.64	52.31
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	45.64	52.31
TraesCS7D01G207200.1	Wheat	nucleus	52.01	51.49
Os08t0427900-01	Rice	nucleus	49.33	51.4
TraesCS7B01G111100.1	Wheat	nucleus	51.68	51.16
TraesCS7A01G204100.1	Wheat	nucleus	51.34	50.83
KRH24828	Soybean	nucleus	24.16	50.35
HORVU7Hr1G041520.2	Barley	nucleus	50.34	49.83
EER89547	Sorghum	nucleus	51.01	49.51
KRH29829	Soybean	nucleus	39.26	47.37
KRH23040	Soybean	plastid	37.92	46.5
Zm00001d037352_P001	Maize	plasma membrane	46.98	45.75
HORVU2Hr1G011700.2	Barley	nucleus	50.34	44.64
KRH07006	Soybean	cytosol	13.09	36.11
KRH75241	Soybean	plastid	15.77	35.34
KRH70494	Soybean	nucleus	29.87	33.46
KRH01617	Soybean	nucleus	20.81	30.54

Protein Annotations

EntrezGene:100801491	MapMan:16.11.1.2	Gene3D:3.30.70.330	EMBL:ACUP02010826	ncoils:Coil	InterPro:FoP_C
EnsemblPlantsGene:GLYMA_18G040400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	UniProt:K7MPS9	ProteinID:KRG97937.1	EnsemblPlants:KRG97938	ProteinID:KRG97938	ProteinID:KRG97938.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR19965	PANTHER:PTHR19965:SF33	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928	UniParc:UPI000233EFCB	SEG:seg

Description

hypothetical protein

Coordinates

chr18:+:3322787..3328498

Molecular Weight (calculated)

31562.4 Da

IEP (calculated)

11.931

GRAVY (calculated)

-0.784

Length

298 amino acids

Sequence
(BLAST)

001: MASSLDMSLD DRIKNRSNRG RGRGGRGRAH SGRGPSGALN GGRMAGAVSS RRMAGASNGG RTTGAVRRGP LMVNTRPSSY AIAKSIRRAR PFPWQHDLFE
101: DSLRAAGIQG VEVGTKLYVS NLDHGVTNED IRELFSELGE LKRFAVHYDK NGHPSGSAEV VYTRRSDAFA ALKRYNNVLL DGKPMKIEIV GSNSELPISA
201: RVNVTGVNGR RKRTVVMTPR GGQAGGGPTM PNRGAGRGRR GGPRSGSGRG GGGGRGRGRG SRGGGGGRGR GRKDAVEKSA EELDKELETY HAEAMNIS

Best Arabidopsis Sequence Match ( AT5G37720.2 )
(BLAST)

001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: VRGGRGGRGP APTVSRRLPI HNQQGGGMRG GRGGFRARGR GNGGRGRGGG RGNGKKPVEK SAADLDKDLE SYHADAMNTS

Arabidopsis Description

ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.