Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH29829 | Soybean | nucleus | 57.89 | 31.17 |
| KRH23040 | Soybean | plastid | 53.38 | 29.22 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 51.13 | 27.98 |
| GSMUA_Achr6P23530_001 | Banana | nucleus | 49.62 | 27.62 |
| GSMUA_Achr10P... | Banana | nucleus | 48.12 | 26.78 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 43.61 | 26.73 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.62 | 25.94 |
| GSMUA_Achr6P15310_001 | Banana | nucleus | 45.11 | 25.53 |
| Solyc11g073280.1.1 | Tomato | nucleus | 45.86 | 24.3 |
| Bra020273.1-P | Field mustard | nucleus | 39.1 | 23.85 |
| CDX80213 | Canola | nucleus | 42.11 | 23.83 |
| Bra002519.1-P | Field mustard | nucleus | 42.11 | 23.53 |
| CDY31583 | Canola | nucleus | 42.11 | 23.43 |
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 44.36 | 23.32 |
| EER92463 | Sorghum | nucleus | 44.36 | 22.96 |
| CDY09236 | Canola | nucleus | 37.59 | 22.94 |
| AT5G59950.5 | Thale cress | nucleus | 42.11 | 22.86 |
| Bra009581.1-P | Field mustard | nucleus | 47.37 | 22.83 |
| CDY40364 | Canola | nucleus | 47.37 | 22.74 |
| CDY10442 | Canola | nucleus | 46.62 | 22.22 |
| CDX80828 | Canola | nucleus | 47.37 | 21.8 |
| CDY55544 | Canola | nucleus | 47.37 | 21.58 |
| AT5G02530.1 | Thale cress | plastid | 47.37 | 21.58 |
| Zm00001d047794_P001 | Maize | nucleus | 40.6 | 21.26 |
| Os03t0278300-02 | Rice | nucleus | 42.86 | 20.88 |
| TraesCS4A01G099300.1 | Wheat | nucleus | 40.6 | 20.61 |
| KRH07006 | Soybean | cytosol | 16.54 | 20.37 |
| TraesCS4B01G205000.1 | Wheat | nucleus | 41.35 | 20.37 |
| Os12t0100100-01 | Rice | nucleus, plastid | 33.83 | 19.74 |
| Os11t0100200-00 | Rice | nucleus | 32.33 | 19.63 |
| TraesCS4D01G205900.1 | Wheat | nucleus | 39.85 | 19.63 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 47.37 | 18.86 |
| TraesCS5A01G157900.1 | Wheat | nucleus | 36.84 | 17.75 |
| TraesCS5D01G163300.1 | Wheat | nucleus | 36.84 | 17.75 |
| TraesCS4D01G133000.1 | Wheat | plastid | 34.59 | 17.69 |
| TraesCS5B01G155800.1 | Wheat | nucleus | 36.84 | 17.69 |
| HORVU5Hr1G049430.2 | Barley | nucleus | 36.84 | 17.44 |
| TraesCS4A01G178200.1 | Wheat | nucleus, plastid | 33.83 | 17.31 |
| Zm00001d019234_P002 | Maize | extracellular | 32.33 | 17.27 |
| EER98238 | Sorghum | nucleus, plastid | 32.33 | 16.86 |
| TraesCS4B01G138300.1 | Wheat | nucleus, plastid | 33.83 | 16.79 |
| KRH70494 | Soybean | nucleus | 31.58 | 15.79 |
| KRH30937 | Soybean | nucleus | 35.34 | 15.77 |
| KRG97938 | Soybean | nucleus | 35.34 | 15.77 |
| TraesCS2D01G240400.1 | Wheat | nucleus, plastid | 30.83 | 15.24 |
| TraesCS2B01G261300.1 | Wheat | nucleus, plastid | 30.83 | 15.19 |
| HORVU4Hr1G024270.1 | Barley | plastid | 33.83 | 14.71 |
| OQU75650 | Sorghum | nucleus | 16.54 | 12.87 |
| Os07t0237100-00 | Rice | nucleus | 31.58 | 12.35 |
| Zm00001d005179_P001 | Maize | plastid | 18.8 | 11.96 |
| HORVU4Hr1G059090.4 | Barley | plastid | 30.83 | 11.58 |
| KRH01617 | Soybean | nucleus | 16.54 | 10.84 |
| TraesCS2A01G244000.1 | Wheat | nucleus | 18.05 | 10.43 |
| HORVU2Hr1G056980.6 | Barley | nucleus | 12.03 | 5.11 |
| KRH24828 | Soybean | nucleus | 4.51 | 4.2 |
Protein Annotations
| EMBL:ACUP02000170 | EnsemblPlants:KRH75241 | EnsemblPlantsGene:GLYMA_01G072600 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 |
| GO:GO:0009505 | GO:GO:0030312 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF51 | ProteinID:KRH75241 | ProteinID:KRH75241.1 |
| SEG:seg | UniParc:UPI0006EDF2CD | UniProt:A0A0R0LCM0 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr1:+:13398591..13403356
Molecular Weight (calculated)
14672.3 Da
IEP (calculated)
10.337
GRAVY (calculated)
-0.555
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MYAAMDMSLD GIIKNNKKSG SGSSRGRTLP FGSRPTRRFP NRAANRTAPY ATARASKVTW QHDLNANQHV AAAGYLAQGG RAASIETGTK LYISNLDYGV
101: SNDDIKEWNA VAIFQDGNWS CFLLENMVKR REL
101: SNDDIKEWNA VAIFQDGNWS CFLLENMVKR REL
001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRTR ERRSTTRWWT
201: RRRWPRWWWS W
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRTR ERRSTTRWWT
201: RRRWPRWWWS W
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.