Factsheet for TraesCS5D01G163300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G244000.1
TraesCS2B01G261300.1
TraesCS2D01G240400.1
TraesCS4A01G099300.1
TraesCS4A01G178200.1
TraesCS4B01G138300.1
TraesCS4B01G205000.1
TraesCS4D01G133000.1
TraesCS4D01G205900.1
TraesCS5A01G157900.1
TraesCS5B01G155800.1
TraesCS5D01G163300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	TraesCS2A01G244000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS2B01G261300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS2D01G240400.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4A01G099300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4A01G178200.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4B01G138300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4B01G205000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4D01G133000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4D01G205900.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5A01G157900.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5B01G155800.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5D01G163300.1	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G157900.1	Wheat	nucleus	98.91	98.91
TraesCS5B01G155800.1	Wheat	nucleus	98.91	98.56
HORVU5Hr1G049430.2	Barley	nucleus	94.57	92.88
Os11t0100200-00	Rice	nucleus	59.78	75.34
Os12t0100100-01	Rice	nucleus, plastid	60.51	73.25
KRH24828	Soybean	nucleus	32.25	62.24
TraesCS4D01G133000.1	Wheat	plastid	56.88	60.38
VIT_06s0004g04340.t01	Wine grape	nucleus	51.81	58.85
KRH29829	Soybean	nucleus	50.72	56.68
KRH23040	Soybean	plastid	49.28	55.97
Solyc10g086400.1.1	Tomato	nucleus	48.19	55.65
VIT_13s0019g00640.t01	Wine grape	cytosol	32.25	55.62
Solyc11g073280.1.1	Tomato	nucleus	50.0	54.98
PGSC0003DMT400049444	Potato	cytosol	47.1	52.63
Bra020273.1-P	Field mustard	nucleus	40.58	51.38
AT5G59950.5	Thale cress	nucleus	45.29	51.02
CDX80213	Canola	nucleus	43.12	50.64
CDY10442	Canola	nucleus	51.09	50.54
CDY09236	Canola	nucleus	39.86	50.46
Bra009581.1-P	Field mustard	nucleus	50.36	50.36
Bra002519.1-P	Field mustard	nucleus	43.12	50.0
CDY40364	Canola	nucleus	50.0	49.82
CDY31583	Canola	nucleus	43.12	49.79
AT5G02530.1	Thale cress	plastid	51.45	48.63
PGSC0003DMT400085575	Potato	nucleus, plastid	38.04	48.39
CDX80828	Canola	nucleus	50.36	48.1
PGSC0003DMT400049442	Potato	nucleus	39.13	47.79
CDY55544	Canola	nucleus	50.36	47.6
TraesCS4D01G205900.1	Wheat	nucleus	44.57	45.56
TraesCS2D01G240400.1	Wheat	nucleus, plastid	39.13	40.15
Bra005728.1-P	Field mustard	nucleus, plastid	48.55	40.12
KRH07006	Soybean	cytosol	15.58	39.81
TraesCS2D01G059800.1	Wheat	nucleus	38.04	37.37
KRH75241	Soybean	plastid	17.75	36.84
TraesCS7D01G207200.1	Wheat	nucleus	39.49	36.21
KRH70494	Soybean	nucleus	34.42	35.71
OQU75650	Sorghum	nucleus	20.65	33.33
KRH01617	Soybean	nucleus	24.28	33.0

Protein Annotations

EnsemblPlants:TraesCS5D01G163300.1	EnsemblPlantsGene:TraesCS5D01G163300	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:FoP_C	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR19965	PANTHER:PTHR19965:SF50	PFAM:PF00076	PFAM:PF13865	PFscan:PS50102	SEG:seg
SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928	TIGR:cd12680	MapMan:16.11.1.2	:

Description

No Description!

Coordinates

chr5D:-:254830280..254832552

Molecular Weight (calculated)

28964.8 Da

IEP (calculated)

10.620

GRAVY (calculated)

-0.648

Length

276 amino acids

Sequence
(BLAST)

001: MADALDMSLD DLISKNKSSS QRGRGRRNPA SGSGSGSASG GPAPAGRRFQ ARAATRAAAA PYHQFNFQPP APAVFAYAAQ QAHAHAHAQA MAMVAPPTGV
101: ETGTKLYISN LDYNVSNEDI KELFAEVGDL KRYSINYDKS GRSKGTAEVI FSRKSDALAA LKRYNNVQLD GKPMKIEVIG TNIEAPPPPA IFTLNTPTIG
201: NFIPSYSGGR GRGGDGGRGW PRGRGGFGGR SAAGRGRGRG DVGRGRGRGG RGSQPVSAND LDADLDKYHS EAMQTS

Best Arabidopsis Sequence Match ( AT5G02530.2 )
(BLAST)

001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GGFMGRPRGG GFGGGNFRGG RGARGRGGRG SGGRGRDENV SAEDLDAELD KYHKEAMETS

Arabidopsis Description

ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.