Factsheet for TraesCS2D01G240400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G244000.1
TraesCS2B01G261300.1
TraesCS2D01G240400.1
TraesCS4A01G099300.1
TraesCS4A01G178200.1
TraesCS4B01G138300.1
TraesCS4B01G205000.1
TraesCS4D01G133000.1
TraesCS4D01G205900.1
TraesCS5A01G157900.1
TraesCS5B01G155800.1
TraesCS5D01G163300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	TraesCS2A01G244000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS2B01G261300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS2D01G240400.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4A01G099300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4A01G178200.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4B01G138300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4B01G205000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4D01G133000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4D01G205900.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5A01G157900.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5B01G155800.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5D01G163300.1	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G244000.1	Wheat	nucleus	84.39	98.7
TraesCS2B01G261300.1	Wheat	nucleus, plastid	98.88	98.52
EER98238	Sorghum	nucleus, plastid	65.43	69.02
Zm00001d019234_P002	Maize	extracellular	62.45	67.47
Zm00001d005179_P001	Maize	plastid	51.67	66.51
Os07t0237100-00	Rice	nucleus	68.77	54.41
KRH24828	Soybean	nucleus	26.39	49.65
HORVU2Hr1G056980.6	Barley	nucleus	54.28	46.65
VIT_13s0019g00640.t01	Wine grape	cytosol	26.39	44.38
VIT_06s0004g04340.t01	Wine grape	nucleus	38.29	42.39
KRH29829	Soybean	nucleus	38.66	42.11
Solyc10g086400.1.1	Tomato	nucleus	36.43	41.0
Bra020273.1-P	Field mustard	nucleus	33.09	40.83
CDY31583	Canola	nucleus	36.06	40.59
CDX80213	Canola	nucleus	35.32	40.43
KRH23040	Soybean	plastid	36.43	40.33
PGSC0003DMT400049444	Potato	cytosol	36.8	40.08
AT5G59950.5	Thale cress	nucleus	36.43	40.0
Bra002519.1-P	Field mustard	nucleus	35.32	39.92
CDY09236	Canola	nucleus	32.34	39.91
Solyc11g073280.1.1	Tomato	nucleus	37.17	39.84
TraesCS5D01G163300.1	Wheat	nucleus	40.15	39.13
CDX80828	Canola	nucleus	41.64	38.75
CDY10442	Canola	nucleus	40.15	38.71
CDY40364	Canola	nucleus	39.78	38.63
Bra009581.1-P	Field mustard	nucleus	39.41	38.41
CDY55544	Canola	nucleus	41.26	38.01
TraesCS4D01G133000.1	Wheat	plastid	36.06	37.31
TraesCS4D01G205900.1	Wheat	nucleus	36.43	36.3
AT5G02530.1	Thale cress	plastid	39.03	35.96
PGSC0003DMT400085575	Potato	nucleus, plastid	29.0	35.94
PGSC0003DMT400049442	Potato	nucleus	29.74	35.4
TraesCS2D01G059800.1	Wheat	nucleus	35.69	34.16
Bra005728.1-P	Field mustard	nucleus, plastid	40.15	32.34
KRH70494	Soybean	nucleus	31.23	31.58
TraesCS7D01G207200.1	Wheat	nucleus	34.57	30.9
KRH75241	Soybean	plastid	15.24	30.83
KRH07006	Soybean	cytosol	11.9	29.63
KRH01617	Soybean	nucleus	20.82	27.59

Protein Annotations

EnsemblPlants:TraesCS2D01G240400.1	EnsemblPlantsGene:TraesCS2D01G240400	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:FoP_C	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR19965	PANTHER:PTHR19965:SF26	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SMART:SM01218	SUPFAM:SSF54928	TIGR:cd12680	MapMan:16.11.1.2	:	:

Description

No Description!

Coordinates

chr2D:-:258793726..258809198

Molecular Weight (calculated)

28416.2 Da

IEP (calculated)

9.604

GRAVY (calculated)

-0.701

Length

269 amino acids

Sequence
(BLAST)

001: MSSGLNMSLD DLIKQSKSRP KANPAFSSGP TRRAAPSART MPYPPSAPKA ATADSLYGVY SEHVAAMATS PPPPVAGPQA LETGTKLHIS NLDSSVTVED
101: VQELFSEIGE LKRYSVNYDK DGKSQGSAEV VFARKVDALD AIERYNGVLL DGKPMKIELI GNKTEPHPTE PLMYNGTSSN YNATPNSLLQ RGDPRGPFHG
201: NGRSGGSGQG GAGKRGMFQG NVRPGNTVQD GGGRGQGRAR GHDRSRVPAS AADLDAELEQ YHAAAVKQK

Best Arabidopsis Sequence Match ( AT5G59950.3 )
(BLAST)

001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAPEST WGHDMFSDRS EDHRSGRSSA GIETGTKLYI SNLDYGVMNE
101: DIKELFAEVG ELKRYTVHFD RSGRSKGTAE VVYSRRGDAL AAVKKYNDVQ LDGKPMKIEI VGTNLQTAAA PSGRPANGNS NGAPWRGGQG RGGQQRGGGR
201: GGGGRGGGGR GRRPGKGPAE KISAEDLDAD LDKYHSGDME TN

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.