Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G056980.6 | |
| HORVU4Hr1G024270.1 | |
| HORVU4Hr1G059090.4 | |
| HORVU5Hr1G049430.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G244000.1 | Wheat | nucleus | 44.73 | 60.87 |
| TraesCS2D01G240400.1 | Wheat | nucleus, plastid | 46.65 | 54.28 |
| TraesCS2B01G261300.1 | Wheat | nucleus, plastid | 46.65 | 54.07 |
| Zm00001d005179_P001 | Maize | plastid | 28.11 | 42.11 |
| EER98238 | Sorghum | nucleus, plastid | 33.23 | 40.78 |
| KRH24828 | Soybean | nucleus | 18.53 | 40.56 |
| Zm00001d019234_P002 | Maize | extracellular | 31.95 | 40.16 |
| Os07t0237100-00 | Rice | nucleus | 37.38 | 34.41 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 15.34 | 30.0 |
| Solyc10g086400.1.1 | Tomato | nucleus | 21.73 | 28.45 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 21.73 | 27.98 |
| KRH29829 | Soybean | nucleus | 22.04 | 27.94 |
| PGSC0003DMT400049444 | Potato | cytosol | 21.73 | 27.53 |
| PGSC0003DMT400049442 | Potato | nucleus | 19.49 | 26.99 |
| KRH23040 | Soybean | plastid | 20.45 | 26.34 |
| Bra020273.1-P | Field mustard | nucleus | 18.21 | 26.15 |
| CDY09236 | Canola | nucleus | 18.21 | 26.15 |
| AT5G59950.5 | Thale cress | nucleus | 20.45 | 26.12 |
| HORVU5Hr1G049430.2 | Barley | nucleus | 23.32 | 25.98 |
| CDY31583 | Canola | nucleus | 19.81 | 25.94 |
| Solyc11g073280.1.1 | Tomato | nucleus | 20.77 | 25.9 |
| CDX80213 | Canola | nucleus | 19.17 | 25.53 |
| CDX80828 | Canola | nucleus | 23.32 | 25.26 |
| Bra002519.1-P | Field mustard | nucleus | 19.17 | 25.21 |
| CDY10442 | Canola | nucleus | 22.04 | 24.73 |
| CDY55544 | Canola | nucleus | 23.0 | 24.66 |
| CDY40364 | Canola | nucleus | 21.73 | 24.55 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 16.93 | 24.42 |
| Bra009581.1-P | Field mustard | nucleus | 21.41 | 24.28 |
| AT5G02530.1 | Thale cress | plastid | 21.73 | 23.29 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 22.36 | 20.96 |
| HORVU7Hr1G041520.2 | Barley | nucleus | 19.81 | 20.6 |
| HORVU4Hr1G024270.1 | Barley | plastid | 20.13 | 20.59 |
| KRH07006 | Soybean | cytosol | 7.03 | 20.37 |
| KRH01617 | Soybean | nucleus | 13.1 | 20.2 |
| HORVU2Hr1G011700.2 | Barley | nucleus | 21.41 | 19.94 |
| KRH70494 | Soybean | nucleus | 16.93 | 19.92 |
| HORVU4Hr1G059090.4 | Barley | plastid | 20.77 | 18.36 |
| KRH75241 | Soybean | plastid | 5.11 | 12.03 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G056980.6 | EnsemblPlantsGene:HORVU2Hr1G056980 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| ncoils:Coil | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF26 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SignalP:SignalP-noTM | SUPFAM:SSF54928 | UniParc:UPI000B4745A5 | UniProt:A0A287I2J8 | MapMan:16.11.1.2 | : |
Description
No Description!
Coordinates
chrchr2H:-:363650039..363703149
Molecular Weight (calculated)
30871.6 Da
IEP (calculated)
10.177
GRAVY (calculated)
-0.573
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXNLA LVLLDAAAVE PVPPHAASYY VEWAGHVPRR PHQAIQVQAQ SQPCLLFRAH PPGGAVRPDH ALPAICSEGR
101: HRRLAVWCLL RARCCHVNLP ATAGGGRATG TRDGDEAAHL QPRLQRHRRG RPAELNFKKQ SSPKQELFSE IGELKRYSVN YDKDGKSQGS AEVVFARKVD
201: ALDAIERYNG VLLDGKPMKI ELIGNKTEPH PTEPLMYNSA SSNYNATPNS LHQRGGPRGL FHGNNGRSGG SGQGGAGKRG MFQGNVHPGN AVQDGGGRGQ
301: GTARGSIYTL LHY
101: HRRLAVWCLL RARCCHVNLP ATAGGGRATG TRDGDEAAHL QPRLQRHRRG RPAELNFKKQ SSPKQELFSE IGELKRYSVN YDKDGKSQGS AEVVFARKVD
201: ALDAIERYNG VLLDGKPMKI ELIGNKTEPH PTEPLMYNSA SSNYNATPNS LHQRGGPRGL FHGNNGRSGG SGQGGAGKRG MFQGNVHPGN AVQDGGGRGQ
301: GTARGSIYTL LHY
001: MFSDRSEDHR SGRSSAGIET GTKLYISNLD YGVMNEDIKE LFAEVGELKR YTVHFDRSGR SKGTAEVVYS RRGDALAAVK KYNDVQLDGK PMKIEIVGTN
101: LQTAAAPSGR PANGNSNGAP WRGGQGRGGQ QRGGGRGGGG RGGGGRGRRP GKGPAEKISA EDLDADLDKY HSGDMETN
101: LQTAAAPSGR PANGNSNGAP WRGGQGRGGQ QRGGGRGGGG RGGGGRGRRP GKGPAEKISA EDLDADLDKY HSGDMETN
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.