Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G056980.6 | |
| HORVU4Hr1G024270.1 | |
| HORVU4Hr1G059090.4 | |
| HORVU5Hr1G049430.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G099300.1 | Wheat | nucleus | 57.63 | 77.86 |
| TraesCS4D01G205900.1 | Wheat | nucleus | 59.04 | 77.41 |
| TraesCS4B01G205000.1 | Wheat | nucleus | 59.04 | 77.41 |
| Os03t0278300-02 | Rice | nucleus | 50.0 | 64.84 |
| EER92463 | Sorghum | nucleus | 45.48 | 62.65 |
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 44.35 | 62.06 |
| KRH24828 | Soybean | nucleus | 22.03 | 54.55 |
| Bra020273.1-P | Field mustard | nucleus | 31.64 | 51.38 |
| CDY31583 | Canola | nucleus | 34.46 | 51.05 |
| CDY09236 | Canola | nucleus | 31.36 | 50.92 |
| Bra002519.1-P | Field mustard | nucleus | 34.18 | 50.84 |
| CDX80213 | Canola | nucleus | 33.62 | 50.64 |
| GSMUA_Achr10P... | Banana | nucleus | 33.9 | 50.21 |
| AT5G59950.5 | Thale cress | nucleus | 34.75 | 50.2 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 34.18 | 49.79 |
| Solyc10g086400.1.1 | Tomato | nucleus | 33.33 | 49.37 |
| PGSC0003DMT400049444 | Potato | cytosol | 34.18 | 48.99 |
| KRH23040 | Soybean | plastid | 33.62 | 48.97 |
| GSMUA_Achr6P23530_001 | Banana | nucleus | 32.77 | 48.54 |
| KRH29829 | Soybean | nucleus | 33.62 | 48.18 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.49 | 48.12 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 21.47 | 47.5 |
| Zm00001d047794_P001 | Maize | nucleus | 33.62 | 46.85 |
| Solyc11g073280.1.1 | Tomato | nucleus | 33.05 | 46.61 |
| PGSC0003DMT400049442 | Potato | nucleus | 27.68 | 43.36 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 26.27 | 42.86 |
| Bra009581.1-P | Field mustard | nucleus | 32.77 | 42.03 |
| CDY40364 | Canola | nucleus | 32.77 | 41.88 |
| CDY10442 | Canola | nucleus | 32.2 | 40.86 |
| CDX80828 | Canola | nucleus | 33.05 | 40.48 |
| GSMUA_Achr6P15310_001 | Banana | nucleus | 26.84 | 40.43 |
| CDY55544 | Canola | nucleus | 33.33 | 40.41 |
| HORVU5Hr1G049430.2 | Barley | nucleus | 31.92 | 40.21 |
| AT5G02530.1 | Thale cress | plastid | 33.05 | 40.07 |
| KRH07006 | Soybean | cytosol | 11.86 | 38.89 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 32.49 | 34.43 |
| HORVU4Hr1G024270.1 | Barley | plastid | 27.97 | 32.35 |
| KRH75241 | Soybean | plastid | 11.58 | 30.83 |
| HORVU7Hr1G041520.2 | Barley | nucleus | 25.42 | 29.9 |
| HORVU2Hr1G011700.2 | Barley | nucleus | 27.12 | 28.57 |
| KRH70494 | Soybean | nucleus | 21.19 | 28.2 |
| KRH01617 | Soybean | nucleus | 14.12 | 24.63 |
| HORVU2Hr1G056980.6 | Barley | nucleus | 18.36 | 20.77 |
Protein Annotations
| MapMan:16.11.1.2 | Gene3D:3.30.70.330 | UniProt:A0A287P865 | InterPro:FoP_C | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:HORVU4Hr1G059090 | EnsemblPlants:HORVU4Hr1G059090.4 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF13865 | PFscan:PS50102 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF51 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 | UniParc:UPI000B46F90E |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:494004701..494008605
Molecular Weight (calculated)
37334.7 Da
IEP (calculated)
10.999
GRAVY (calculated)
-0.717
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: NTPRLGNPIQ LPHQFDSPSP SSPLPTLAPD PPAPARAKPW RRPSTCRSTT SSRTTRRATP PPAGAAAASR AAVDLPLAAA ARPPPPPLSE ASAPTGAPSR
101: GRGTGRRPTS RRRYERIARA TRLCAVGEGD RWTSVFAEAR EDDPVVFSLW CDAIQAPESA WQHDMYSDAS ARGGGGGRVS AIETGTKLFI TNLDFGVSTE
201: DLKELFSELG DLKRCSINFD RSGRSKGTAE VIFARRGDAV AAIKKYNNVQ LDGKPMKIEI LGTNTPTAPA ALPTNNGSYA RNVAKSAPRG VSASLPQNRP
301: RARGGRGRGG GGGGGSGSGG RRGKERSQPR SAEELDAELE KYHAQGAAPM QTNE
101: GRGTGRRPTS RRRYERIARA TRLCAVGEGD RWTSVFAEAR EDDPVVFSLW CDAIQAPESA WQHDMYSDAS ARGGGGGRVS AIETGTKLFI TNLDFGVSTE
201: DLKELFSELG DLKRCSINFD RSGRSKGTAE VIFARRGDAV AAIKKYNNVQ LDGKPMKIEI LGTNTPTAPA ALPTNNGSYA RNVAKSAPRG VSASLPQNRP
301: RARGGRGRGG GGGGGSGSGG RRGKERSQPR SAEELDAELE KYHAQGAAPM QTNE
001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GGFMGRPRGG GFGGGNFRGG RGARGRGGRG SGGRGRDENV SAEDLDAELD KYHKEAMETS
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GGFMGRPRGG GFGGGNFRGG RGARGRGGRG SGGRGRDENV SAEDLDAELD KYHKEAMETS
Arabidopsis Description
ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.