Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH07006 | Soybean | cytosol | 30.45 | 75.0 |
| KRH01617 | Soybean | nucleus | 55.64 | 72.91 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 28.2 | 46.88 |
| KRH24828 | Soybean | nucleus | 24.81 | 46.15 |
| Bra020273.1-P | Field mustard | nucleus | 33.83 | 41.28 |
| CDY09236 | Canola | nucleus | 33.46 | 40.83 |
| KRH29829 | Soybean | nucleus | 37.59 | 40.49 |
| Os11t0100200-00 | Rice | nucleus | 33.08 | 40.18 |
| GSMUA_Achr10P... | Banana | nucleus | 35.71 | 39.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.34 | 39.33 |
| CDX80213 | Canola | nucleus | 34.59 | 39.15 |
| KRH23040 | Soybean | plastid | 35.71 | 39.09 |
| Os12t0100100-01 | Rice | nucleus, plastid | 33.46 | 39.04 |
| GSMUA_Achr6P23530_001 | Banana | nucleus | 34.96 | 38.91 |
| AT5G59950.5 | Thale cress | nucleus | 35.71 | 38.78 |
| Bra002519.1-P | Field mustard | nucleus | 34.59 | 38.66 |
| CDY31583 | Canola | nucleus | 34.59 | 38.49 |
| CDY10442 | Canola | nucleus | 38.72 | 36.92 |
| CDY40364 | Canola | nucleus | 37.97 | 36.46 |
| Bra009581.1-P | Field mustard | nucleus | 37.59 | 36.23 |
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 34.21 | 35.97 |
| EER92463 | Sorghum | nucleus | 34.59 | 35.8 |
| TraesCS4A01G178200.1 | Wheat | nucleus, plastid | 34.96 | 35.77 |
| TraesCS4D01G133000.1 | Wheat | plastid | 34.96 | 35.77 |
| CDX80828 | Canola | nucleus | 38.72 | 35.64 |
| AT5G02530.1 | Thale cress | plastid | 38.72 | 35.27 |
| TraesCS4B01G138300.1 | Wheat | nucleus, plastid | 35.34 | 35.07 |
| CDY55544 | Canola | nucleus | 38.35 | 34.93 |
| GSMUA_Achr6P15310_001 | Banana | nucleus | 30.83 | 34.89 |
| TraesCS5D01G163300.1 | Wheat | nucleus | 35.71 | 34.42 |
| Zm00001d019234_P002 | Maize | extracellular | 31.95 | 34.14 |
| EER98238 | Sorghum | nucleus, plastid | 32.33 | 33.73 |
| TraesCS5A01G157900.1 | Wheat | nucleus | 34.96 | 33.7 |
| TraesCS5B01G155800.1 | Wheat | nucleus | 34.96 | 33.57 |
| Zm00001d005179_P001 | Maize | plastid | 26.32 | 33.49 |
| HORVU5Hr1G049430.2 | Barley | nucleus | 35.34 | 33.45 |
| Os03t0278300-02 | Rice | nucleus | 34.21 | 33.33 |
| TraesCS4A01G099300.1 | Wheat | nucleus | 31.2 | 31.68 |
| KRH75241 | Soybean | plastid | 15.79 | 31.58 |
| Zm00001d047794_P001 | Maize | nucleus | 30.08 | 31.5 |
| TraesCS2D01G240400.1 | Wheat | nucleus, plastid | 31.58 | 31.23 |
| TraesCS2B01G261300.1 | Wheat | nucleus, plastid | 31.58 | 31.11 |
| TraesCS4B01G205000.1 | Wheat | nucleus | 31.58 | 31.11 |
| TraesCS4D01G205900.1 | Wheat | nucleus | 31.2 | 30.74 |
| TraesCS2A01G244000.1 | Wheat | nucleus | 25.94 | 30.0 |
| KRG97938 | Soybean | nucleus | 33.46 | 29.87 |
| HORVU4Hr1G024270.1 | Barley | plastid | 34.21 | 29.74 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 37.22 | 29.64 |
| KRH30937 | Soybean | nucleus | 33.08 | 29.53 |
| OQU75650 | Sorghum | nucleus | 15.79 | 24.56 |
| Os07t0237100-00 | Rice | nucleus | 31.2 | 24.41 |
| HORVU4Hr1G059090.4 | Barley | plastid | 28.2 | 21.19 |
| HORVU2Hr1G056980.6 | Barley | nucleus | 19.92 | 16.93 |
Protein Annotations
| EntrezGene:100785926 | MapMan:16.11.1.2 | Gene3D:3.30.70.330 | UniProt:A0A0R0KUJ0 | EMBL:ACUP02000779 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_02G093700 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | EnsemblPlants:KRH70494 | ProteinID:KRH70494 | ProteinID:KRH70494.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF36 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0006EDF129 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:8369588..8371738
Molecular Weight (calculated)
29820.5 Da
IEP (calculated)
9.636
GRAVY (calculated)
-0.612
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGIDMSLD DIKKRSAAAV ASRRRFTVVH NPARTTPYPI PQCLIGCQVR QQSMVALFPE MVLEESGAAK IESGTKLYLS NLDHGVTNDD IKLLFSEEGE
101: LKSYTIHYDQ SGRSKGTAEV VFVRHSDALL AIKKYNNMRL DGKPLQIELV GTSLATPAVA PLCQNNLMGR PNDVHFSTRG RVGDSGFHND FAQGYLPRGR
201: GEEKDHIRKV SFRDLDHSFE RFHRTQSQRS YAKVNGNFGK VTAKDLDDDL ERYHLEAKRI KKQNGK
101: LKSYTIHYDQ SGRSKGTAEV VFVRHSDALL AIKKYNNMRL DGKPLQIELV GTSLATPAVA PLCQNNLMGR PNDVHFSTRG RVGDSGFHND FAQGYLPRGR
201: GEEKDHIRKV SFRDLDHSFE RFHRTQSQRS YAKVNGNFGK VTAKDLDDDL ERYHLEAKRI KKQNGK
001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRTR ERRSTTRWWT
201: RRRWPRWWWS W
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRTR ERRSTTRWWT
201: RRRWPRWWWS W
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.