Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 4
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0278300-02 | |
| Os07t0237100-00 | |
| Os11t0100200-00 | |
| Os12t0100100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G02530.1 | Os03t0278300-02 | AT5G02530.1 | 21798944 |
| AT5G02530.1 | Os07t0237100-00 | AT5G02530.1 | 21798944 |
| AT5G02530.1 | Os11t0100200-00 | AT5G02530.1 | 21798944 |
| AT5G02530.1 | Os12t0100100-01 | AT5G02530.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0100200-00 | Rice | nucleus | 92.98 | 96.8 |
| TraesCS5D01G163300.1 | Wheat | nucleus | 73.25 | 60.51 |
| TraesCS5A01G157900.1 | Wheat | nucleus | 73.25 | 60.51 |
| TraesCS5B01G155800.1 | Wheat | nucleus | 73.25 | 60.29 |
| KRH24828 | Soybean | nucleus | 37.28 | 59.44 |
| HORVU5Hr1G049430.2 | Barley | nucleus | 72.81 | 59.07 |
| KRH23040 | Soybean | plastid | 59.65 | 55.97 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 58.33 | 54.73 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 38.16 | 54.38 |
| KRH29829 | Soybean | nucleus | 58.77 | 54.25 |
| TraesCS4A01G178200.1 | Wheat | nucleus, plastid | 60.09 | 52.69 |
| TraesCS4B01G138300.1 | Wheat | nucleus, plastid | 61.84 | 52.61 |
| TraesCS4D01G133000.1 | Wheat | plastid | 59.65 | 52.31 |
| Solyc11g073280.1.1 | Tomato | nucleus | 56.58 | 51.39 |
| Bra020273.1-P | Field mustard | nucleus | 49.12 | 51.38 |
| Solyc10g086400.1.1 | Tomato | nucleus | 53.07 | 50.63 |
| CDY09236 | Canola | nucleus | 48.25 | 50.46 |
| AT5G59950.5 | Thale cress | nucleus | 52.63 | 48.98 |
| CDX80213 | Canola | nucleus | 50.44 | 48.94 |
| Bra002519.1-P | Field mustard | nucleus | 50.44 | 48.32 |
| CDY31583 | Canola | nucleus | 50.44 | 48.12 |
| PGSC0003DMT400049444 | Potato | cytosol | 51.75 | 47.77 |
| CDY10442 | Canola | nucleus | 57.46 | 46.95 |
| HORVU4Hr1G024270.1 | Barley | plastid | 62.28 | 46.41 |
| Bra009581.1-P | Field mustard | nucleus | 55.7 | 46.01 |
| CDY40364 | Canola | nucleus | 55.26 | 45.49 |
| CDX80828 | Canola | nucleus | 57.46 | 45.33 |
| CDY55544 | Canola | nucleus | 57.89 | 45.21 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 42.98 | 45.16 |
| AT5G02530.1 | Thale cress | plastid | 57.46 | 44.86 |
| Os03t0278300-02 | Rice | nucleus | 53.07 | 44.32 |
| PGSC0003DMT400049442 | Potato | nucleus | 42.98 | 43.36 |
| KRH07006 | Soybean | cytosol | 18.42 | 38.89 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 56.14 | 38.32 |
| Os06t0256200-01 | Rice | nucleus | 45.18 | 35.03 |
| KRH75241 | Soybean | plastid | 19.74 | 33.83 |
| KRH70494 | Soybean | nucleus | 39.04 | 33.46 |
| Os08t0427900-01 | Rice | nucleus | 41.23 | 32.87 |
| OQU75650 | Sorghum | nucleus | 24.56 | 32.75 |
| KRH01617 | Soybean | nucleus | 27.19 | 30.54 |
| Os07t0237100-00 | Rice | nucleus | 43.42 | 29.12 |
Protein Annotations
| MapMan:16.11.1.2 | Gene3D:3.30.70.330 | EntrezGene:4351236 | ProteinID:ABA96145.1 | EMBL:AK061492 | EMBL:AK241396 |
| ProteinID:BAF28929.1 | ProteinID:BAT15437.1 | InterPro:FoP_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os12g0100100 | EnsemblPlants:Os12t0100100-01 |
| PFAM:PF00076 | PFAM:PF13865 | PFscan:PS50102 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF50 | UniProt:Q2QZ01 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 | UniParc:UPI0000681BF5 |
| RefSeq:XP_015620450.1 | SEG:seg | : | : | : | : |
Description
RNA Binding Domain-Containing Protein 1, RNA binding domain 1-containing proteinSimilar to ALY protein. (Os12t0100100-01);Similar to ALY protein. (Os12t0100100-02);Similar to ALY protein. (Os12t0100100-03)
Coordinates
chr12:+:2682..5419
Molecular Weight (calculated)
24811.3 Da
IEP (calculated)
10.354
GRAVY (calculated)
-0.668
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MAADSLLDMS LDDLITNKYK RRSRPGPAPS ARRSHSRAAT RSAAAPYHAI TFQAPPTAYV HPTPAANVET GTKLYISNLD YAVSNEDIKE LFSEVGDVKR
101: YSINYDRSGR SKGTAEVVFS RKSDALAAVK RYNNVQLDGK PMKLELIGIN IEPPPPAIFG FAAPAGYFDF PPKRGGRGWP RGRGGFGGRG RGHVGRGRGR
201: GDRGSRKISA EDLDADLDKY HAEGMQMS
101: YSINYDRSGR SKGTAEVVFS RKSDALAAVK RYNNVQLDGK PMKLELIGIN IEPPPPAIFG FAAPAGYFDF PPKRGGRGWP RGRGGFGGRG RGHVGRGRGR
201: GDRGSRKISA EDLDADLDKY HAEGMQMS
001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRGG QGRGGQQRGG
201: GRGGGGRGGG GRGRRPGKGP AEKISAEDLD ADLDKYHSGD METN
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRGG QGRGGQQRGG
201: GRGGGGRGGG GRGRRPGKGP AEKISAEDLD ADLDKYHSGD METN
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.