Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89547 | Sorghum | nucleus | 82.65 | 79.15 |
| TraesCS7D01G207200.1 | Wheat | nucleus | 79.93 | 78.07 |
| HORVU7Hr1G041520.2 | Barley | nucleus | 79.25 | 77.41 |
| TraesCS7B01G111100.1 | Wheat | nucleus | 79.25 | 77.41 |
| TraesCS7A01G204100.1 | Wheat | nucleus | 79.25 | 77.41 |
| Zm00001d037352_P001 | Maize | plasma membrane | 76.19 | 73.2 |
| VIT_14s0006g01020.t01 | Wine grape | nucleus | 53.74 | 58.74 |
| GSMUA_Achr5P05950_001 | Banana | nucleus | 52.04 | 56.04 |
| Solyc11g011130.1.1 | Tomato | nucleus | 53.74 | 55.83 |
| Solyc04g014460.2.1 | Tomato | nucleus | 51.36 | 55.51 |
| PGSC0003DMT400040562 | Potato | nucleus | 53.06 | 55.32 |
| PGSC0003DMT400060737 | Potato | nucleus | 50.68 | 53.99 |
| GSMUA_Achr2P18730_001 | Banana | nucleus | 55.1 | 52.77 |
| KRG97938 | Soybean | nucleus | 52.72 | 52.01 |
| KRH30937 | Soybean | nucleus | 52.04 | 51.34 |
| Os08t0427900-01 | Rice | nucleus | 47.96 | 49.3 |
| AT5G37720.1 | Thale cress | nucleus | 45.24 | 46.18 |
| CDY01711 | Canola | nucleus | 45.58 | 45.73 |
| Os11t0100200-00 | Rice | nucleus | 33.67 | 45.21 |
| Os12t0100100-01 | Rice | nucleus, plastid | 35.03 | 45.18 |
| CDY49635 | Canola | nucleus, plastid | 43.2 | 44.1 |
| CDY07496 | Canola | nucleus, plastid | 43.2 | 44.1 |
| Bra004158.1-P | Field mustard | nucleus, plastid | 43.2 | 44.1 |
| AT1G66260.1 | Thale cress | nucleus | 42.86 | 42.71 |
| CDX74565 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 37.07 | 41.92 |
| Bra028145.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 37.07 | 41.92 |
| Os03t0278300-02 | Rice | nucleus | 38.44 | 41.39 |
| Os07t0237100-00 | Rice | nucleus | 30.95 | 26.76 |
Protein Annotations
| MapMan:16.11.1.2 | Gene3D:3.30.70.330 | EntrezGene:4340675 | EMBL:AK062020 | ProteinID:BAD46300.1 | ProteinID:BAF19228.1 |
| ProteinID:BAS97095.1 | ProteinID:EEE65469.1 | InterPro:FoP_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os06g0256200 | EnsemblPlants:Os06t0256200-01 |
| PFAM:PF00076 | PFAM:PF13865 | PFscan:PS50102 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF27 | UniProt:Q652G7 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 | UniParc:UPI000043A538 |
| RefSeq:XP_015644210.1 | RefSeq:XP_015644211.1 | SEG:seg | : | : | : |
Description
Similar to Keratinocytes proline-rich protein. (Os06t0256200-01);Similar to THO complex subunit 4. (Os06t0256200-02);Similar to THO complex subunit 4. (Os06t0256200-03)
Coordinates
chr6:-:8129580..8134453
Molecular Weight (calculated)
31819.7 Da
IEP (calculated)
11.522
GRAVY (calculated)
-0.746
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSLDMSLD DMIKNNRNSR GRGRGRSQGG GRGRGDGQRF SYGSGRGRGA GTFRGRGVGV PSRRPLGVST RSSSYAIAKS FNKTKDIVWR QDLFEDSMVA
101: AGLSVTESST KLYISNLHYG VTKEDIQELF SEMGHLKHCA VHYDNNRRPT GSAEVIFTRR SEAVAALKRY NNVRLDGKPM KIEVIGADLG MAAPSAPRVS
201: VVPGARGRGQ REVVMMPGGS GFGRGAAGSS NFIPGWKRNN FAQRGGQGRG RGRGRNNFGR GRGRGYVRKG PVEKSAEQLD KELDSYHSGA MNVD
101: AGLSVTESST KLYISNLHYG VTKEDIQELF SEMGHLKHCA VHYDNNRRPT GSAEVIFTRR SEAVAALKRY NNVRLDGKPM KIEVIGADLG MAAPSAPRVS
201: VVPGARGRGQ REVVMMPGGS GFGRGAAGSS NFIPGWKRNN FAQRGGQGRG RGRGRNNFGR GRGRGYVRKG PVEKSAEQLD KELDSYHSGA MNVD
001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: QGGGGRGRVR GGRGGRGPAP TVSRRLPIHN QQGGGMRGGR GGFRARGRGN GGRGRGGGRG NGKKPVEKSA ADLDKDLESY HADAMNTS
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: QGGGGRGRVR GGRGGRGPAP TVSRRLPIHN QQGGGMRGGR GGFRARGRGN GGRGRGGGRG NGKKPVEKSA ADLDKDLESY HADAMNTS
Arabidopsis Description
ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.