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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • plastid 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 21132161
nucleus: 27291164
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG97938 Soybean nucleus 95.97 95.97
VIT_14s0006g01020.t01 Wine grape nucleus 64.43 71.38
PGSC0003DMT400040562 Potato nucleus 60.07 63.48
Solyc11g011130.1.1 Tomato nucleus 60.07 63.25
Solyc04g014460.2.1 Tomato nucleus 57.38 62.87
PGSC0003DMT400060737 Potato nucleus 55.7 60.14
GSMUA_Achr5P05950_001 Banana nucleus 54.03 58.97
AT5G37720.1 Thale cress nucleus 56.04 57.99
CDY01711 Canola nucleus 54.7 55.63
Bra004158.1-P Field mustard nucleus, plastid 53.69 55.56
CDY07496 Canola nucleus, plastid 53.69 55.56
CDY49635 Canola nucleus, plastid 53.69 55.56
GSMUA_Achr2P18730_001 Banana nucleus 57.05 55.37
AT1G66260.1 Thale cress nucleus 54.03 54.58
EES15014 Sorghum nucleus 49.33 54.04
Zm00001d050357_P005 Maize plasma membrane 48.66 53.9
Os06t0256200-01 Rice nucleus 51.34 52.04
Bra028145.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 45.3 51.92
CDX74565 Canola cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 45.3 51.92
TraesCS2A01G060200.1 Wheat nucleus 48.32 51.8
TraesCS2B01G073800.1 Wheat nucleus 48.32 51.61
TraesCS2D01G059800.1 Wheat nucleus 48.66 51.6
TraesCS7D01G207200.1 Wheat nucleus 51.34 50.83
TraesCS7B01G111100.1 Wheat nucleus 51.01 50.5
KRH24828 Soybean nucleus 24.16 50.35
Os08t0427900-01 Rice nucleus 48.32 50.35
TraesCS7A01G204100.1 Wheat nucleus 50.67 50.17
HORVU7Hr1G041520.2 Barley nucleus 50.34 49.83
EER89547 Sorghum nucleus 50.34 48.86
KRH29829 Soybean nucleus 39.26 47.37
KRH23040 Soybean plastid 37.58 46.09
Zm00001d037352_P001 Maize plasma membrane 46.31 45.1
HORVU2Hr1G011700.2 Barley nucleus 48.99 43.45
KRH75241 Soybean plastid 15.77 35.34
KRH07006 Soybean cytosol 12.75 35.19
KRH70494 Soybean nucleus 29.53 33.08
KRH01617 Soybean nucleus 20.47 30.05
Protein Annotations
EntrezGene:100820344MapMan:16.11.1.2Gene3D:3.30.70.330EMBL:ACUP02007106ncoils:CoilInterPro:FoP_C
EnsemblPlantsGene:GLYMA_11G216200GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488UniProt:I1LMC1
InterPro:IPR000504InterPro:IPR012677EnsemblPlants:KRH30937ProteinID:KRH30937ProteinID:KRH30937.1InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076PFAM:PF13865PFscan:PS50102InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360
SMART:SM01218SUPFAM:SSF54928UniParc:UPI000233CC9FSEG:seg::
Description
hypothetical protein
Coordinates
chr11:-:31037944..31043272
Molecular Weight (calculated)
31748.7 Da
IEP (calculated)
11.931
GRAVY (calculated)
-0.768
Length
298 amino acids
Sequence
(BLAST)
001: MASSLDMSLD DRIKNRSNNR GRGRGGRGRA HSGRGPSGTL NGRRMVGAVN SRRMAGAGNG GRTTGAVRRG PLMVNTRPSS YAIAKSIRRA RPFPWQHDLF
101: EDSLRAAGIQ GVEVGTKLYV SNLDHGVTNE DIRELFSELG ELKRFAVHYD KNGHPSGSAE VVYTRRSDAF AALKRYNNVL LDGKPMKIEI VGSNSELPIS
201: ARVNVTGVNG RRKRTVVMTS RGGQAGGGPA MPTRGAGWGR RGGPRSGSGR GGAGGRGRGR GRGGAGGRGR GRKDAVEKSA EELDKELETY HAEAMNIS
Best Arabidopsis Sequence Match ( AT5G37720.2 )
(BLAST)
001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: VRGGRGGRGP APTVSRRLPI HNQQGGGMRG GRGGFRARGR GNGGRGRGGG RGNGKKPVEK SAADLDKDLE SYHADAMNTS
Arabidopsis Description
ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.