Factsheet for TraesCS2A01G060200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G059800.1	Wheat	nucleus	99.64	98.58
TraesCS2B01G073800.1	Wheat	nucleus	98.2	97.85
EES15014	Sorghum	nucleus	82.73	84.56
Zm00001d050357_P005	Maize	plasma membrane	80.58	83.27
Os08t0427900-01	Rice	nucleus	83.81	81.47
HORVU2Hr1G011700.2	Barley	nucleus	98.2	81.25
GSMUA_Achr5P05950_001	Banana	nucleus	56.83	57.88
VIT_14s0006g01020.t01	Wine grape	nucleus	51.8	53.53
GSMUA_Achr2P18730_001	Banana	nucleus	58.63	53.09
Solyc11g011130.1.1	Tomato	nucleus	52.52	51.59
PGSC0003DMT400040562	Potato	nucleus	51.8	51.06
Solyc04g014460.2.1	Tomato	nucleus	48.56	49.63
KRG97938	Soybean	nucleus	52.52	48.99
PGSC0003DMT400060737	Potato	nucleus	48.2	48.55
KRH30937	Soybean	nucleus	51.8	48.32
TraesCS7A01G204100.1	Wheat	nucleus	48.92	45.18
AT5G37720.1	Thale cress	nucleus	44.96	43.4
Bra004158.1-P	Field mustard	nucleus, plastid	44.6	43.06
CDY49635	Canola	nucleus, plastid	44.6	43.06
CDY07496	Canola	nucleus, plastid	44.6	43.06
CDY01711	Canola	nucleus	45.32	43.0
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	39.93	42.69
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	39.93	42.69
AT1G66260.1	Thale cress	nucleus	44.24	41.69
TraesCS2A01G244000.1	Wheat	nucleus	32.37	39.13
TraesCS4A01G099300.1	Wheat	nucleus	35.97	38.17
TraesCS5A01G157900.1	Wheat	nucleus	37.41	37.68
TraesCS4A01G178200.1	Wheat	nucleus, plastid	34.17	36.54

Protein Annotations

EnsemblPlants:TraesCS2A01G060200.1	EnsemblPlantsGene:TraesCS2A01G060200	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:FoP_C	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
ncoils:Coil	PANTHER:PTHR19965	PANTHER:PTHR19965:SF33	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928	TIGR:cd12680	MapMan:16.11.1.2	:

Description

No Description!

Coordinates

chr2A:+:26872728..26878268

Molecular Weight (calculated)

30141.6 Da

IEP (calculated)

11.580

GRAVY (calculated)

-0.747

Length

278 amino acids

Sequence
(BLAST)

001: MSFYARRGGD RGSERFQGGG RGGYAMRGRS GFPPRGPLGI NARPSARIIA KSFSRTKDMT WRPDLFSDSM AASGIETGTK LYISNLDYRV SNEDIKELFS
101: EVGHLKRFAV HFDGYGRQNG TAEVVFTRRS DAIAALKRYN NVLLDGKSMK IEVIGSDLGL SMTPRINVVG ASNGRATRTV VMTPETGRRG GGSSTRPLSN
201: PTTRLNRGAF QAGRGAFQAG RGGGRGYAPS QAQFQGRGRG RGQFRGRGRG RGRKGAEKSA DDLDKDLESY HAEAMKTD

Best Arabidopsis Sequence Match ( AT5G37720.1 )
(BLAST)

001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: QGGGGRGRVR GGRGGRGPAP TVSRRLPIHN QQGGGMRGGR GGFRARGRGN GGRGRGGGRG NGKKPVEKSA ADLDKDLESY HADAMNTS

Arabidopsis Description

ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.