Factsheet for TraesCS4A01G099300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G244000.1
TraesCS2B01G261300.1
TraesCS2D01G240400.1
TraesCS4A01G099300.1
TraesCS4A01G178200.1
TraesCS4B01G138300.1
TraesCS4B01G205000.1
TraesCS4D01G133000.1
TraesCS4D01G205900.1
TraesCS5A01G157900.1
TraesCS5B01G155800.1
TraesCS5D01G163300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	TraesCS2A01G244000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS2B01G261300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS2D01G240400.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4A01G099300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4A01G178200.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4B01G138300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4B01G205000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4D01G133000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4D01G205900.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5A01G157900.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5B01G155800.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5D01G163300.1	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G205900.1	Wheat	nucleus	98.86	95.93
TraesCS4B01G205000.1	Wheat	nucleus	98.47	95.56
Os03t0278300-02	Rice	nucleus	78.24	75.09
EER92463	Sorghum	nucleus	72.14	73.54
Zm00001d028655_P001	Maize	extracellular, mitochondrion	70.23	72.73
HORVU4Hr1G059090.4	Barley	plastid	77.86	57.63
GSMUA_Achr10P...	Banana	nucleus	52.29	57.32
VIT_06s0004g04340.t01	Wine grape	nucleus	53.05	57.2
KRH23040	Soybean	plastid	52.67	56.79
Zm00001d047794_P001	Maize	nucleus	54.96	56.69
Bra020273.1-P	Field mustard	nucleus	46.56	55.96
CDX80213	Canola	nucleus	49.62	55.32
CDY31583	Canola	nucleus	50.38	55.23
GSMUA_Achr6P23530_001	Banana	nucleus	50.38	55.23
GSMUA_AchrUn_...	Banana	nucleus	50.38	55.23
CDY09236	Canola	nucleus	45.8	55.05
Bra002519.1-P	Field mustard	nucleus	50.0	55.04
KRH29829	Soybean	nucleus	51.53	54.66
Solyc11g073280.1.1	Tomato	nucleus	52.29	54.58
AT5G59950.5	Thale cress	nucleus	50.76	54.29
Solyc10g086400.1.1	Tomato	nucleus	49.24	53.97
KRH24828	Soybean	nucleus	29.39	53.85
PGSC0003DMT400049444	Potato	cytosol	50.38	53.44
PGSC0003DMT400085575	Potato	nucleus, plastid	42.75	51.61
VIT_13s0019g00640.t01	Wine grape	cytosol	30.53	50.0
PGSC0003DMT400049442	Potato	nucleus	41.22	47.79
Bra009581.1-P	Field mustard	nucleus	49.62	47.1
CDY40364	Canola	nucleus	49.62	46.93
GSMUA_Achr6P15310_001	Banana	nucleus	41.98	46.81
CDY10442	Canola	nucleus	48.85	45.88
CDX80828	Canola	nucleus	50.0	45.33
CDY55544	Canola	nucleus	50.38	45.21
TraesCS5A01G157900.1	Wheat	nucleus	46.95	44.57
AT5G02530.1	Thale cress	plastid	49.24	44.18
TraesCS4A01G178200.1	Wheat	nucleus, plastid	41.98	42.31
KRH75241	Soybean	plastid	20.61	40.6
Bra005728.1-P	Field mustard	nucleus, plastid	48.85	38.32
KRH07006	Soybean	cytosol	15.27	37.04
TraesCS2A01G060200.1	Wheat	nucleus	38.17	35.97
TraesCS2A01G244000.1	Wheat	nucleus	30.92	35.22
TraesCS7A01G204100.1	Wheat	nucleus	40.08	34.88
KRH70494	Soybean	nucleus	31.68	31.2
KRH01617	Soybean	nucleus	22.52	29.06

Protein Annotations

EnsemblPlants:TraesCS4A01G099300.1	EnsemblPlantsGene:TraesCS4A01G099300	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:FoP_C	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR19965	PANTHER:PTHR19965:SF51	PFAM:PF00076	PFAM:PF13865	PFscan:PS50102	SEG:seg
SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928	TIGR:cd12680	MapMan:16.11.1.2	:

Description

No Description!

Coordinates

chr4A:-:111293137..111295126

Molecular Weight (calculated)

27652.4 Da

IEP (calculated)

10.965

GRAVY (calculated)

-0.857

Length

262 amino acids

Sequence
(BLAST)

001: MAESLDMSLE DIIKSNKKGN SSSGGGGRRR EGRRGSAAAA GGVGPNRRAF KRSGNRAAPY QPPKAPESAW QHDMYSDASA RGGGGGRVSA IETGTKLLIT
101: NLDFGVSTED LKELFSELGD VKRCLIHYDR SGRSKGTAEV IFARRGDAVA ALRKYNNVQL DGKPMKIEIL GTNTPTAPAA LPTNNGSYAR NVAKSAPRGV
201: SASLPQNRPR ARGGRGRRGG GGGSGSGGRR GKERSQPRSA EELDAELEKY HAQGTTPMQT TE

Best Arabidopsis Sequence Match ( AT5G59950.5 )
(BLAST)

001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.