Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005179_P001 | |
| Zm00001d019234_P002 | |
| Zm00001d028655_P001 | |
| Zm00001d047794_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 71.65 | 71.94 |
| EER92463 | Sorghum | nucleus | 72.44 | 71.6 |
| Os03t0278300-02 | Rice | nucleus | 63.78 | 59.34 |
| TraesCS4A01G099300.1 | Wheat | nucleus | 56.69 | 54.96 |
| TraesCS4B01G205000.1 | Wheat | nucleus | 57.48 | 54.07 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 33.86 | 53.75 |
| TraesCS4D01G205900.1 | Wheat | nucleus | 56.69 | 53.33 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 43.7 | 51.15 |
| GSMUA_Achr6P15310_001 | Banana | nucleus | 47.24 | 51.06 |
| GSMUA_Achr10P... | Banana | nucleus | 47.64 | 50.63 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.64 | 50.63 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 48.03 | 50.21 |
| GSMUA_Achr6P23530_001 | Banana | nucleus | 46.46 | 49.37 |
| KRH23040 | Soybean | plastid | 46.85 | 48.97 |
| PGSC0003DMT400049442 | Potato | nucleus | 42.52 | 47.79 |
| Solyc11g073280.1.1 | Tomato | nucleus | 46.06 | 46.61 |
| KRH29829 | Soybean | nucleus | 44.88 | 46.15 |
| Bra020273.1-P | Field mustard | nucleus | 39.37 | 45.87 |
| CDY09236 | Canola | nucleus | 38.58 | 44.95 |
| AT5G59950.5 | Thale cress | nucleus | 43.31 | 44.9 |
| CDX80213 | Canola | nucleus | 40.94 | 44.26 |
| CDY31583 | Canola | nucleus | 41.34 | 43.93 |
| Bra002519.1-P | Field mustard | nucleus | 40.94 | 43.7 |
| PGSC0003DMT400049444 | Potato | cytosol | 41.73 | 42.91 |
| Solyc10g086400.1.1 | Tomato | nucleus | 39.37 | 41.84 |
| Bra009581.1-P | Field mustard | nucleus | 44.49 | 40.94 |
| CDY10442 | Canola | nucleus | 44.88 | 40.86 |
| CDY40364 | Canola | nucleus | 44.49 | 40.79 |
| KRH07006 | Soybean | cytosol | 17.32 | 40.74 |
| KRH75241 | Soybean | plastid | 21.26 | 40.6 |
| KRH24828 | Soybean | nucleus | 22.44 | 39.86 |
| CDX80828 | Canola | nucleus | 44.88 | 39.45 |
| CDY55544 | Canola | nucleus | 45.28 | 39.38 |
| AT5G02530.1 | Thale cress | plastid | 44.09 | 38.36 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 45.28 | 34.43 |
| HORVU4Hr1G059090.4 | Barley | plastid | 46.85 | 33.62 |
| Zm00001d019234_P002 | Maize | extracellular | 32.28 | 32.93 |
| Zm00001d005179_P001 | Maize | plastid | 25.2 | 30.62 |
| KRH70494 | Soybean | nucleus | 31.5 | 30.08 |
| Zm00001d050357_P005 | Maize | plasma membrane | 29.92 | 28.25 |
| KRH01617 | Soybean | nucleus | 19.68 | 24.63 |
| Zm00001d037352_P001 | Maize | plasma membrane | 29.13 | 24.18 |
Protein Annotations
| EnsemblPlants:Zm00001d047794_P001 | EnsemblPlants:Zm00001d047794_T001 | EnsemblPlantsGene:Zm00001d047794 | EntrezGene:100272743 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR19965 |
| PANTHER:PTHR19965:SF51 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:AQL07623.1 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0008441FB6 | UniProt:A0A1D6PDH2 | MapMan:16.11.1.2 | : | : |
Description
THO complex subunit 4B
Coordinates
chr9:+:141969609..141971370
Molecular Weight (calculated)
27137.3 Da
IEP (calculated)
10.479
GRAVY (calculated)
-0.367
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETLDMTLD DIIKNNKKSN PSSRGARRSR GVSAPGGGTG GVGPTRRPFK RAGNRQAPYQ PPKAPDAAWQ HDMYPAVAAG GGGGGGRVSA LETGAKLYIS
101: NLDFGVSNED IKELFSELGD LKRFSINYDR SGRSKVQMPS YSLLLVSYIH LTSRSLTFVV PRTSQGTAEV VFARRSDAVA AVKKYDNVQL DGKPMKIEIV
201: GTNTPAAAAA HPVPNGGHAR NAARRYISHL IIHPPSLSFV NIICSGMFGS IQND
101: NLDFGVSNED IKELFSELGD LKRFSINYDR SGRSKVQMPS YSLLLVSYIH LTSRSLTFVV PRTSQGTAEV VFARRSDAVA AVKKYDNVQL DGKPMKIEIV
201: GTNTPAAAAA HPVPNGGHAR NAARRYISHL IIHPPSLSFV NIICSGMFGS IQND
001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRTR ERRSTTRWWT
201: RRRWPRWWWS W
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRTR ERRSTTRWWT
201: RRRWPRWWWS W
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.