Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005179_P001 | |
| Zm00001d019234_P002 | |
| Zm00001d028655_P001 | |
| Zm00001d047794_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER98238 | Sorghum | nucleus, plastid | 91.16 | 89.02 |
| Zm00001d005179_P001 | Maize | plastid | 72.69 | 86.6 |
| TraesCS2D01G240400.1 | Wheat | nucleus, plastid | 67.47 | 62.45 |
| TraesCS2B01G261300.1 | Wheat | nucleus, plastid | 67.47 | 62.22 |
| TraesCS2A01G244000.1 | Wheat | nucleus | 55.82 | 60.43 |
| Os07t0237100-00 | Rice | nucleus | 68.27 | 50.0 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 30.92 | 48.12 |
| KRH24828 | Soybean | nucleus | 25.7 | 44.76 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 43.37 | 44.44 |
| Bra020273.1-P | Field mustard | nucleus | 38.15 | 43.58 |
| CDY31583 | Canola | nucleus | 41.77 | 43.51 |
| CDX80213 | Canola | nucleus | 40.96 | 43.4 |
| Bra002519.1-P | Field mustard | nucleus | 41.37 | 43.28 |
| Solyc10g086400.1.1 | Tomato | nucleus | 41.37 | 43.1 |
| AT5G59950.5 | Thale cress | nucleus | 42.17 | 42.86 |
| CDY09236 | Canola | nucleus | 37.35 | 42.66 |
| KRH23040 | Soybean | plastid | 41.37 | 42.39 |
| PGSC0003DMT400049444 | Potato | cytosol | 41.77 | 42.11 |
| KRH29829 | Soybean | nucleus | 41.77 | 42.11 |
| Solyc11g073280.1.1 | Tomato | nucleus | 40.96 | 40.64 |
| Bra009581.1-P | Field mustard | nucleus | 44.18 | 39.86 |
| CDY40364 | Canola | nucleus | 44.18 | 39.71 |
| CDX80828 | Canola | nucleus | 45.78 | 39.45 |
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 39.76 | 39.13 |
| CDY10442 | Canola | nucleus | 43.78 | 39.07 |
| PGSC0003DMT400049442 | Potato | nucleus | 34.94 | 38.5 |
| CDY55544 | Canola | nucleus | 44.98 | 38.36 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 32.93 | 37.79 |
| AT5G02530.1 | Thale cress | plastid | 44.18 | 37.67 |
| KRH07006 | Soybean | cytosol | 14.86 | 34.26 |
| Zm00001d050357_P005 | Maize | plasma membrane | 36.55 | 33.83 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 44.18 | 32.93 |
| KRH75241 | Soybean | plastid | 17.27 | 32.33 |
| Zm00001d047794_P001 | Maize | nucleus | 32.93 | 32.28 |
| KRH70494 | Soybean | nucleus | 34.14 | 31.95 |
| HORVU2Hr1G056980.6 | Barley | nucleus | 40.16 | 31.95 |
| Zm00001d037352_P001 | Maize | plasma membrane | 35.34 | 28.76 |
| KRH01617 | Soybean | nucleus | 23.29 | 28.57 |
Protein Annotations
| EntrezGene:100193488 | MapMan:16.11.1.2 | Gene3D:3.30.70.330 | UniProt:B4FF68 | EMBL:BT035756 | EMBL:EU967618 |
| InterPro:FoP_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM52516.1 | ProteinID:ONM52517.1 | ProteinID:ONM52518.1 | PFAM:PF00076 |
| PFAM:PF13865 | PFscan:PS50102 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF26 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 | UniParc:UPI00017B654B | EnsemblPlantsGene:Zm00001d019234 | EnsemblPlants:Zm00001d019234_P002 |
| EnsemblPlants:Zm00001d019234_T002 | SEG:seg | : | : | : | : |
Description
THO complex subunit 4B
Coordinates
chr7:-:23322425..23327390
Molecular Weight (calculated)
26710.5 Da
IEP (calculated)
10.129
GRAVY (calculated)
-0.749
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGLDMSLD DLIKQSKSRP KDSPASLSGP ARRAPHPARA APYPPAAPKA RAAADSPYGV YSKHIAAIAP PPLAKARSLE TGTKLHISNL DSGVTIEDVQ
101: ELFSEVGELK RYSMNYDKDG RSKGTVEVVF ARKVDALDAI KRYNGVLLDG KPMNLELIGN NVEPPPMPPV IHSRPLQNYN DIHSSMPQSQ RGGQRRVPQG
201: NGRGGRSSQS SGGRGQGKGR GQDRNRTTIS AADLDAELDK YHAAAVKEE
101: ELFSEVGELK RYSMNYDKDG RSKGTVEVVF ARKVDALDAI KRYNGVLLDG KPMNLELIGN NVEPPPMPPV IHSRPLQNYN DIHSSMPQSQ RGGQRRVPQG
201: NGRGGRSSQS SGGRGQGKGR GQDRNRTTIS AADLDAELDK YHAAAVKEE
001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.