Factsheet for PGSC0003DMT400049444

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
nucleus 5

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400049442
PGSC0003DMT400049444
PGSC0003DMT400085575

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	PGSC0003DMT400049442	AT5G02530.1	21798944
AT5G02530.1	PGSC0003DMT400049444	AT5G02530.1	21798944
AT5G02530.1	PGSC0003DMT400085575	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g086400.1.1	Tomato	nucleus	89.07	92.05
PGSC0003DMT400049442	Potato	nucleus	80.97	88.5
GSMUA_Achr10P...	Banana	nucleus	61.94	64.02
GSMUA_Achr6P23530_001	Banana	nucleus	59.51	61.51
GSMUA_AchrUn_...	Banana	nucleus	58.7	60.67
Bra020273.1-P	Field mustard	nucleus	51.01	57.8
CDY09236	Canola	nucleus	50.61	57.34
CDX80213	Canola	nucleus	54.25	57.02
CDY31583	Canola	nucleus	54.66	56.49
Bra002519.1-P	Field mustard	nucleus	54.25	56.3
AT5G59950.5	Thale cress	nucleus	54.66	55.1
PGSC0003DMT400085575	Potato	nucleus, plastid	48.18	54.84
Os11t0100200-00	Rice	nucleus	47.77	53.88
EER92463	Sorghum	nucleus	55.06	52.92
Zm00001d028655_P001	Maize	extracellular, mitochondrion	53.85	52.57
Os12t0100100-01	Rice	nucleus, plastid	47.77	51.75
Bra009581.1-P	Field mustard	nucleus	57.09	51.09
CDY40364	Canola	nucleus	57.09	50.9
Os03t0278300-02	Rice	nucleus	55.87	50.55
TraesCS4A01G099300.1	Wheat	nucleus	53.44	50.38
GSMUA_Achr6P15310_001	Banana	nucleus	47.77	50.21
CDY10442	Canola	nucleus	56.28	49.82
TraesCS4B01G205000.1	Wheat	nucleus	53.85	49.26
CDX80828	Canola	nucleus	57.49	49.13
CDY55544	Canola	nucleus	57.89	48.97
AT5G02530.1	Thale cress	plastid	57.49	48.63
TraesCS4D01G205900.1	Wheat	nucleus	53.04	48.52
TraesCS5A01G157900.1	Wheat	nucleus	52.63	47.1
TraesCS5D01G163300.1	Wheat	nucleus	52.63	47.1
HORVU5Hr1G049430.2	Barley	nucleus	53.44	46.98
TraesCS5B01G155800.1	Wheat	nucleus	52.63	46.93
TraesCS4D01G133000.1	Wheat	plastid	46.96	44.62
TraesCS4A01G178200.1	Wheat	nucleus, plastid	46.96	44.62
TraesCS4B01G138300.1	Wheat	nucleus, plastid	47.77	44.03
Zm00001d019234_P002	Maize	extracellular	42.11	41.77
Zm00001d047794_P001	Maize	nucleus	42.91	41.73
Bra005728.1-P	Field mustard	nucleus, plastid	55.47	41.02
EER98238	Sorghum	nucleus, plastid	42.11	40.78
Zm00001d005179_P001	Maize	plastid	33.2	39.23
PGSC0003DMT400040562	Potato	nucleus	44.13	38.65
HORVU4Hr1G024270.1	Barley	plastid	47.77	38.56
PGSC0003DMT400060737	Potato	nucleus	41.7	37.32
TraesCS2D01G240400.1	Wheat	nucleus, plastid	40.08	36.8
TraesCS2B01G261300.1	Wheat	nucleus, plastid	40.08	36.67
TraesCS2A01G244000.1	Wheat	nucleus	32.39	34.78
OQU75650	Sorghum	nucleus	23.89	34.5
HORVU4Hr1G059090.4	Barley	plastid	48.99	34.18
Os07t0237100-00	Rice	nucleus	41.3	30.0
HORVU2Hr1G056980.6	Barley	nucleus	27.53	21.73

Protein Annotations

EntrezGene:102603961	MapMan:16.11.1.2	Gene3D:3.30.70.330	ncoils:Coil	InterPro:FoP_C	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1BNR7
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF13865	EnsemblPlantsGene:PGSC0003DMG402019209	PGSC:PGSC0003DMG402019209	EnsemblPlants:PGSC0003DMT400049444
PFscan:PS50102	PANTHER:PTHR19965	PANTHER:PTHR19965:SF51	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SMART:SM01218	SUPFAM:SSF54928	UniParc:UPI000296A765	RefSeq:XP_006349515.1	SEG:seg	:

Description

ALY protein [Source:PGSC_GENE;Acc:PGSC0003DMG402019209]

Coordinates

chr10:-:51372311..51377894

Molecular Weight (calculated)

26929.4 Da

IEP (calculated)

10.666

GRAVY (calculated)

-0.987

Length

247 amino acids

Sequence
(BLAST)

001: MSNLDVSLDD LIKRNKSSTS RNPRPRTAGS GSGSGPGFDS GPGPRRRFPN RASNRPAPYS VHAPESTWDH DMFAEHAPSS ARGPGVSGIE TRIKLLISNL
101: DYGVSNEDIK ELFSEAGDIK RYSIHYDKSG RSKGTAEVIF SRRRDAEAAI KRYNNVQLDG KPMKIEFAGT NIAPPALPPI RNRLYGNPNP APRSQQRGGG
201: FRRPRGGARG GSMRKDGGRG RGRGENVSAE DLDAELEKYH AEAMQTN

Best Arabidopsis Sequence Match ( AT5G59950.5 )
(BLAST)

001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.