Factsheet for TraesCS4B01G138300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G244000.1
TraesCS2B01G261300.1
TraesCS2D01G240400.1
TraesCS4A01G099300.1
TraesCS4A01G178200.1
TraesCS4B01G138300.1
TraesCS4B01G205000.1
TraesCS4D01G133000.1
TraesCS4D01G205900.1
TraesCS5A01G157900.1
TraesCS5B01G155800.1
TraesCS5D01G163300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	TraesCS2A01G244000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS2B01G261300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS2D01G240400.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4A01G099300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4A01G178200.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4B01G138300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4B01G205000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4D01G133000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4D01G205900.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5A01G157900.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5B01G155800.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5D01G163300.1	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G133000.1	Wheat	plastid	94.03	96.92
TraesCS4A01G178200.1	Wheat	nucleus, plastid	94.03	96.92
HORVU4Hr1G024270.1	Barley	plastid	91.04	79.74
Os11t0100200-00	Rice	nucleus	52.99	64.84
Os12t0100100-01	Rice	nucleus, plastid	52.61	61.84
TraesCS5B01G155800.1	Wheat	nucleus	60.45	58.48
KRH24828	Soybean	nucleus	28.73	53.85
VIT_06s0004g04340.t01	Wine grape	nucleus	48.13	53.09
KRH23040	Soybean	plastid	45.9	50.62
Solyc10g086400.1.1	Tomato	nucleus	44.78	50.21
VIT_13s0019g00640.t01	Wine grape	cytosol	29.48	49.38
Solyc11g073280.1.1	Tomato	nucleus	45.9	49.0
Bra020273.1-P	Field mustard	nucleus	39.55	48.62
AT5G59950.5	Thale cress	nucleus	44.03	48.16
PGSC0003DMT400049444	Potato	cytosol	44.03	47.77
CDY09236	Canola	nucleus	38.81	47.71
KRH29829	Soybean	nucleus	43.66	47.37
CDX80213	Canola	nucleus	41.04	46.81
Bra002519.1-P	Field mustard	nucleus	41.42	46.64
CDY31583	Canola	nucleus	41.42	46.44
CDY10442	Canola	nucleus	47.39	45.52
Bra009581.1-P	Field mustard	nucleus	45.52	44.2
CDY40364	Canola	nucleus	45.52	44.04
CDX80828	Canola	nucleus	47.39	43.94
PGSC0003DMT400049442	Potato	nucleus	36.94	43.81
AT5G02530.1	Thale cress	plastid	47.01	43.15
CDY55544	Canola	nucleus	46.64	42.81
PGSC0003DMT400085575	Potato	nucleus, plastid	34.33	42.4
TraesCS4B01G205000.1	Wheat	nucleus	41.79	41.48
KRH07006	Soybean	cytosol	15.3	37.96
Bra005728.1-P	Field mustard	nucleus, plastid	45.15	36.23
TraesCS2B01G261300.1	Wheat	nucleus, plastid	36.19	35.93
KRH70494	Soybean	nucleus	35.07	35.34
TraesCS2B01G073800.1	Wheat	nucleus	36.19	34.77
KRH75241	Soybean	plastid	16.79	33.83
KRH01617	Soybean	nucleus	25.0	33.0
TraesCS7B01G111100.1	Wheat	nucleus	35.82	31.89
OQU75650	Sorghum	nucleus	19.03	29.82

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF13865	PFscan:PS50102
PANTHER:PTHR19965	PANTHER:PTHR19965:SF50	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM01218
SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS4B01G138300	EnsemblPlants:TraesCS4B01G138300.1	TIGR:cd12680	SEG:seg	:

Description

No Description!

Coordinates

chr4B:+:182257596..182259398

Molecular Weight (calculated)

28395.6 Da

IEP (calculated)

10.657

GRAVY (calculated)

-0.462

Length

268 amino acids

Sequence
(BLAST)

001: MADTLDMSLD DIITKNKHHH RRGRHNPASA ASGGSAHPRR RFRSRAATRA VVAPYHQLSL QQQVPPAFGY VAQPMAMVTA PSALDSPTKL YISNLDYNVS
101: NEDIKELFSE MGEIQRYSIN YDKSGRSKGT AEVVFSARSS AVAALKKYNN VHLDGKPMKI EVIGTNIEAP APIPAIFALA SPPGNFSFPS KSGPGMGVSG
201: RGWSRGGGGF SGRSGGGFGG RGGGRLVGRG RGRTDRVRGK GGVGNLELSA ADLDADLDKY HSAAMQIS

Best Arabidopsis Sequence Match ( AT5G02530.1 )
(BLAST)

001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GRGGFMGRPR GGGFGGGNFR GGRGARGRGG RGSGGRGRDE NVSAEDLDAE LDKYHKEAME TS

Arabidopsis Description

ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.