Factsheet for TraesCS2B01G073800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G060200.1	Wheat	nucleus	97.85	98.2
TraesCS2D01G059800.1	Wheat	nucleus	98.57	97.86
EES15014	Sorghum	nucleus	83.51	85.66
Zm00001d050357_P005	Maize	plasma membrane	81.36	84.39
Os08t0427900-01	Rice	nucleus	83.51	81.47
HORVU2Hr1G011700.2	Barley	nucleus	96.77	80.36
GSMUA_Achr5P05950_001	Banana	nucleus	56.63	57.88
VIT_14s0006g01020.t01	Wine grape	nucleus	51.97	53.9
GSMUA_Achr2P18730_001	Banana	nucleus	58.42	53.09
Solyc11g011130.1.1	Tomato	nucleus	51.97	51.24
PGSC0003DMT400040562	Potato	nucleus	51.25	50.71
Solyc04g014460.2.1	Tomato	nucleus	48.75	50.0
KRG97938	Soybean	nucleus	52.33	48.99
PGSC0003DMT400060737	Potato	nucleus	48.03	48.55
KRH30937	Soybean	nucleus	51.61	48.32
TraesCS7B01G111100.1	Wheat	nucleus	48.75	45.18
AT5G37720.1	Thale cress	nucleus	45.52	44.1
CDY01711	Canola	nucleus	45.88	43.69
Bra004158.1-P	Field mustard	nucleus, plastid	44.8	43.4
CDY49635	Canola	nucleus, plastid	44.8	43.4
CDY07496	Canola	nucleus, plastid	44.8	43.4
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	40.14	43.08
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	40.14	43.08
AT1G66260.1	Thale cress	nucleus	44.8	42.37
TraesCS5B01G155800.1	Wheat	nucleus	37.63	37.91
TraesCS4B01G205000.1	Wheat	nucleus	36.56	37.78
TraesCS4B01G138300.1	Wheat	nucleus, plastid	34.77	36.19
TraesCS2B01G261300.1	Wheat	nucleus, plastid	34.41	35.56

Protein Annotations

EnsemblPlants:TraesCS2B01G073800.1	EnsemblPlantsGene:TraesCS2B01G073800	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:FoP_C	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR19965	PANTHER:PTHR19965:SF33	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SMART:SM01218	SUPFAM:SSF54928	TIGR:cd12680	MapMan:16.11.1.2	:	:

Description

No Description!

Coordinates

chr2B:+:39963741..39969334

Molecular Weight (calculated)

30120.6 Da

IEP (calculated)

11.503

GRAVY (calculated)

-0.767

Length

279 amino acids

Sequence
(BLAST)

001: MSFYARRGGD RGSERFQGGG GRGGYAMRGR SGLPPRGPLG INARPSARII AKSFSRTKDM TWRPDLFSDS MAASGIETGT KLYISNLDYR VSNEDIKELF
101: SEVGHLKRFA VHFDGYGRQN GTAEVVFTRR SDAIAALKRY NNVLLDGKSM KIEVIGSDLG LSMTPRINVA GASNGRATRT VVMTPETGRR GGGSSTRPLS
201: NPTTRLNRGA FQAGRGGFQA GRGGGRGYAP SQAQFQGRGR GRGQFRGQGR GRGRKGPEKS ADDLDKDLES YHAEAMKTD

Best Arabidopsis Sequence Match ( AT5G37720.1 )
(BLAST)

001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: QGGGGRGRVR GGRGGRGPAP TVSRRLPIHN QQGGGMRGGR GGFRARGRGN GGRGRGGGRG NGKKPVEKSA ADLDKDLESY HADAMNTS

Arabidopsis Description

ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.