Factsheet for PGSC0003DMT400040562

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g011130.1.1	Tomato	nucleus	97.16	96.82
PGSC0003DMT400060737	Potato	nucleus	79.79	81.52
VIT_14s0006g01020.t01	Wine grape	nucleus	64.54	67.66
KRG97938	Soybean	nucleus	64.18	60.74
KRH30937	Soybean	nucleus	63.48	60.07
AT5G37720.1	Thale cress	nucleus	59.22	57.99
CDY01711	Canola	nucleus	58.87	56.66
GSMUA_Achr5P05950_001	Banana	nucleus	54.61	56.41
Zm00001d050357_P005	Maize	plasma membrane	52.13	54.65
EES15014	Sorghum	nucleus	52.48	54.41
Os06t0256200-01	Rice	nucleus	55.32	53.06
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	48.58	52.69
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	48.58	52.69
AT1G66260.1	Thale cress	nucleus	54.96	52.54
GSMUA_Achr2P18730_001	Banana	nucleus	56.74	52.12
CDY07496	Canola	nucleus, plastid	53.19	52.08
Bra004158.1-P	Field mustard	nucleus, plastid	53.19	52.08
CDY49635	Canola	nucleus, plastid	53.19	52.08
TraesCS2A01G060200.1	Wheat	nucleus	51.06	51.8
TraesCS2D01G059800.1	Wheat	nucleus	51.42	51.6
TraesCS2B01G073800.1	Wheat	nucleus	50.71	51.25
Os08t0427900-01	Rice	nucleus	51.06	50.35
TraesCS7D01G207200.1	Wheat	nucleus	51.06	47.84
TraesCS7A01G204100.1	Wheat	nucleus	50.71	47.51
TraesCS7B01G111100.1	Wheat	nucleus	50.71	47.51
HORVU7Hr1G041520.2	Barley	nucleus	50.71	47.51
EER89547	Sorghum	nucleus	51.06	46.91
Zm00001d037352_P001	Maize	plasma membrane	48.23	44.44
PGSC0003DMT400049444	Potato	cytosol	38.65	44.13
HORVU2Hr1G011700.2	Barley	nucleus	52.48	44.05
PGSC0003DMT400085575	Potato	nucleus, plastid	32.62	42.4
PGSC0003DMT400049442	Potato	nucleus	31.21	38.94

Protein Annotations

EntrezGene:102577655	EntrezGene:102583179	MapMan:16.11.1.2	Gene3D:3.30.70.330	InterPro:FoP_C	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1BA21
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF13865	EnsemblPlantsGene:PGSC0003DMG402015684	PGSC:PGSC0003DMG402015684	EnsemblPlants:PGSC0003DMT400040562
PFscan:PS50102	PANTHER:PTHR19965	PANTHER:PTHR19965:SF33	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SMART:SM01218	SUPFAM:SSF54928	UniParc:UPI00029485B8	RefSeq:XP_006364627.1	RefSeq:XP_006364628.1	SEG:seg

Description

ALY protein [Source:PGSC_GENE;Acc:PGSC0003DMG402015684]

Coordinates

chr11:+:1770435..1775563

Molecular Weight (calculated)

30190.7 Da

IEP (calculated)

11.989

GRAVY (calculated)

-0.798

Length

282 amino acids

Sequence
(BLAST)

001: MASLDMTLDD MIKSRRNTER GGRGQGRARR GRGAGGSFRG GPFRGGRTTG APRRGPLGVN ARPSAYTIAK TFRRTKNLPW QNGLFEDSLR AAGLSSVLES
101: GTKLYVSNLD IGVTNEDIRE LFSEMGELVR FAIHYDKNGR PSGAAEVVFA RRSDAFQALK RYNNVQLDGK PMKIEIVGSN PEIPLSARVN VVGGTNRRRT
201: VVMAPGGPAR GRGGATNRGS SQRGRGGFRN APGRGRGGGG GRGWGRSRGR GGRGSNRAAD KSAEDLDKEL DSYHANADAM QT

Best Arabidopsis Sequence Match ( AT5G37720.2 )
(BLAST)

001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: VRGGRGGRGP APTVSRRLPI HNQQGGGMRG GRGGFRARGR GNGGRGRGGG RGNGKKPVEK SAADLDKDLE SYHADAMNTS

Arabidopsis Description

ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.