Factsheet for Bra028145.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	100.0	100.0
AT5G37720.1	Thale cress	nucleus	78.08	70.49
Bra004158.1-P	Field mustard	nucleus, plastid	59.62	53.82
PGSC0003DMT400060737	Potato	nucleus	51.92	48.91
Solyc04g014460.2.1	Tomato	nucleus	51.15	48.9
PGSC0003DMT400040562	Potato	nucleus	52.69	48.58
Solyc11g011130.1.1	Tomato	nucleus	52.69	48.41
VIT_14s0006g01020.t01	Wine grape	nucleus	49.62	47.96
KRG97938	Soybean	nucleus	52.31	45.64
KRH30937	Soybean	nucleus	51.92	45.3
GSMUA_Achr5P05950_001	Banana	nucleus	45.38	43.22
Zm00001d050357_P005	Maize	plasma membrane	42.69	41.26
EES15014	Sorghum	nucleus	42.69	40.81
TraesCS2B01G073800.1	Wheat	nucleus	43.08	40.14
TraesCS2A01G060200.1	Wheat	nucleus	42.69	39.93
GSMUA_Achr2P18730_001	Banana	nucleus	46.92	39.74
TraesCS2D01G059800.1	Wheat	nucleus	42.69	39.5
Bra020273.1-P	Field mustard	nucleus	32.69	38.99
Bra002519.1-P	Field mustard	nucleus	35.0	38.24
Os08t0427900-01	Rice	nucleus	41.92	38.11
Os06t0256200-01	Rice	nucleus	41.92	37.07
HORVU2Hr1G011700.2	Barley	nucleus	43.46	33.63
TraesCS7A01G204100.1	Wheat	nucleus	38.85	33.55
TraesCS7B01G111100.1	Wheat	nucleus	38.85	33.55
TraesCS7D01G207200.1	Wheat	nucleus	38.85	33.55
HORVU7Hr1G041520.2	Barley	nucleus	38.46	33.22
EER89547	Sorghum	nucleus	38.85	32.9
Bra009581.1-P	Field mustard	nucleus	34.23	32.25
Zm00001d037352_P001	Maize	plasma membrane	35.0	29.74
Bra005728.1-P	Field mustard	nucleus, plastid	34.23	26.65

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra028145	EnsemblPlants:Bra028145.1	EnsemblPlants:Bra028145.1-P	InterPro:FoP_C
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005730	InterPro:IPR000504
InterPro:IPR012677	UniProt:M4EH80	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF13865	PFscan:PS50102
PANTHER:PTHR19965	PANTHER:PTHR19965:SF33	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM01218
SUPFAM:SSF54928	UniParc:UPI00025443D0	SEG:seg	:	:	:

Description

AT5G37720 (E=2e-081) | RNA and export factor-binding protein, putative

Coordinates

chrA04:-:6097318..6098702

Molecular Weight (calculated)

27932.2 Da

IEP (calculated)

11.025

GRAVY (calculated)

-0.586

Length

260 amino acids

Sequence
(BLAST)

001: MRACSPPHSL IMLEVIGEHL AASRFSAAYY ECPGFFFGTG APVRRTRSVP WQNGLFEDGL RAAGVSGVDV ETRLHITNLD NGVTNDDIRE LFSEIGELKR
101: YAIHFDKNGR PSGTAEVVYP RRSDAVQALK KYNNVLLDGR PMRLEILGGN NSEAPLSGRV NVNVSGLNGR LKRTVVIQQG GGRGIGRLRG RGGRGPAPTV
201: NRLPIQNRQG GGRGGFRGGR GRGGRGRGGG RGNGKKPVEK SAADLDKDLE SYHADAMNTS

Best Arabidopsis Sequence Match ( AT5G37720.1 )
(BLAST)

001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: QGGGGRGRVR GGRGGRGPAP TVSRRLPIHN QQGGGMRGGR GGFRARGRGN GGRGRGGGRG NGKKPVEKSA ADLDKDLESY HADAMNTS

Arabidopsis Description

ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.