Factsheet for HORVU7Hr1G041520.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G207200.1	Wheat	nucleus	96.35	96.35
TraesCS7B01G111100.1	Wheat	nucleus	95.68	95.68
TraesCS7A01G204100.1	Wheat	nucleus	95.35	95.35
Os06t0256200-01	Rice	nucleus	77.41	79.25
EER89547	Sorghum	nucleus	75.75	74.27
Zm00001d037352_P001	Maize	plasma membrane	71.43	70.26
VIT_14s0006g01020.t01	Wine grape	nucleus	48.17	53.9
GSMUA_Achr5P05950_001	Banana	nucleus	47.51	52.38
Solyc11g011130.1.1	Tomato	nucleus	48.17	51.24
Solyc04g014460.2.1	Tomato	nucleus	46.18	51.1
GSMUA_Achr2P18730_001	Banana	nucleus	51.83	50.81
PGSC0003DMT400060737	Potato	nucleus	46.51	50.72
PGSC0003DMT400040562	Potato	nucleus	47.51	50.71
KRG97938	Soybean	nucleus	49.83	50.34
KRH30937	Soybean	nucleus	49.83	50.34
CDY07496	Canola	nucleus, plastid	40.86	42.71
CDY49635	Canola	nucleus, plastid	40.86	42.71
Bra004158.1-P	Field mustard	nucleus, plastid	40.86	42.71
AT5G37720.1	Thale cress	nucleus	40.53	42.36
CDY01711	Canola	nucleus	40.53	41.64
AT1G66260.1	Thale cress	nucleus	39.87	40.68
HORVU2Hr1G011700.2	Barley	nucleus	44.85	40.18
HORVU5Hr1G049430.2	Barley	nucleus	36.54	39.15
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	33.22	38.46
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	33.22	38.46
HORVU4Hr1G024270.1	Barley	plastid	32.23	31.7
HORVU4Hr1G059090.4	Barley	plastid	29.9	25.42
HORVU2Hr1G056980.6	Barley	nucleus	20.6	19.81

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	UniProt:A0A287W812	InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:HORVU7Hr1G041520	EnsemblPlants:HORVU7Hr1G041520.2	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF13865	PFscan:PS50102	PANTHER:PTHR19965	PANTHER:PTHR19965:SF27
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928	UniParc:UPI000B487A32
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:+:115427507..115432183

Molecular Weight (calculated)

32497.5 Da

IEP (calculated)

11.512

GRAVY (calculated)

-0.747

Length

301 amino acids

Sequence
(BLAST)

001: MEAALDMSLD DMIKSRSGRG RGGGGQRVGR GRGDGQRSGR GDGQRLGRGL GRGHGVGTFR GRGVPSQRPL GVNTRSSSYA IAKSFNKTKD FAWTHDRFED
101: SMVAAGLPGI ETGTKLYVSN LHYGVTKEDL QELFSEMGHL KNCIVHYDNN RHPTGSAEVI FTRRSEAVQA LKRYNNVRLD GKEMKIEMIG ANLGLAAAPA
201: PRVSVVPGAR GRGQREVVMS RPSGFGRGAT DSSGFLPGWK RNNGFAQRGG TVRGRGRGRG RSTFGRGRGR GVYVRKGSVK SADQLDKELD TYHNSGAMNV
301: D

Best Arabidopsis Sequence Match ( AT1G66260.2 )
(BLAST)

001: MSDALNMTLD EIVKKSKSER SAAARSGGKG VSRKSGRGRG GPNGVVGGGR GGGPVRRGPL AVNTRPSSSF SINKLARRKR SLPWQNQNDL YEETLRAVGV
101: SGVEVGTTVY ITNLDQGVTN EDIRELYAEI GELKRYAIHY DKNGRPSGSA EVVYMRRSDA IQAMRKYNNV LLDGRPMKLE ILGGNTESAP VAARVNVTGL
201: NGRMKRSVFI GQGVRGGRVG RGRGSGPSGR RLPLQQNQQG GVTAGRGGFR GRGRGNGGGR GNKSGGRGGK KPVEKSAADL DKDLESYHAE AMNIS

Arabidopsis Description

ALY3THO complex subunit 4C [Source:UniProtKB/Swiss-Prot;Acc:Q94EH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.