Factsheet for HORVU2Hr1G011700.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G060200.1	Wheat	nucleus	81.25	98.2
TraesCS2D01G059800.1	Wheat	nucleus	81.55	97.51
TraesCS2B01G073800.1	Wheat	nucleus	80.36	96.77
EES15014	Sorghum	nucleus	68.45	84.56
Zm00001d050357_P005	Maize	plasma membrane	66.67	83.27
Os08t0427900-01	Rice	nucleus	68.75	80.77
GSMUA_Achr5P05950_001	Banana	nucleus	47.92	58.97
VIT_14s0006g01020.t01	Wine grape	nucleus	43.75	54.65
GSMUA_Achr2P18730_001	Banana	nucleus	49.11	53.75
Solyc11g011130.1.1	Tomato	nucleus	44.35	52.65
PGSC0003DMT400040562	Potato	nucleus	44.05	52.48
Solyc04g014460.2.1	Tomato	nucleus	41.67	51.47
KRG97938	Soybean	nucleus	44.64	50.34
PGSC0003DMT400060737	Potato	nucleus	41.07	50.0
KRH30937	Soybean	nucleus	43.45	48.99
HORVU7Hr1G041520.2	Barley	nucleus	40.18	44.85
AT5G37720.1	Thale cress	nucleus	38.1	44.44
CDY01711	Canola	nucleus	38.39	44.03
CDY49635	Canola	nucleus, plastid	37.5	43.75
CDY07496	Canola	nucleus, plastid	37.5	43.75
Bra004158.1-P	Field mustard	nucleus, plastid	37.5	43.75
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	33.63	43.46
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	33.63	43.46
AT1G66260.1	Thale cress	nucleus	36.9	42.03
HORVU5Hr1G049430.2	Barley	nucleus	31.85	38.08
HORVU4Hr1G024270.1	Barley	plastid	30.06	33.01
HORVU4Hr1G059090.4	Barley	plastid	28.57	27.12
HORVU2Hr1G056980.6	Barley	nucleus	19.94	21.41

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	UniProt:A0A287H340	ncoils:Coil	InterPro:FoP_C	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:HORVU2Hr1G011700	EnsemblPlants:HORVU2Hr1G011700.2	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR19965	PANTHER:PTHR19965:SF33
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928	UniParc:UPI000B47727E
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:23650833..23656760

Molecular Weight (calculated)

36554.5 Da

IEP (calculated)

11.838

GRAVY (calculated)

-0.751

Length

336 amino acids

Sequence
(BLAST)

001: EHRPIPPDSQ ATASAARQQR RRRRQHSCGR SAGGKAGPAQ IVIVLFKTCL ICCRPKQLRM SFYARRGGDR GSERFQGGGR GGYAMRGRSG LPPRGPLGIN
101: ARPSARIIAK SFSRTKDMTW RPDLFSDSMA ASGIETGTKL YISNLDYRVS NEDIKELFSE VGHLKRFAVH FDGYGRQNGT AEVVFTRRSD AIAALKRYNN
201: VLLDGKSMKI EVIGSDLGLS MTPRINVVGA SNGRATRTVV MTPETGRRGG GSSTRPLSNP TNRLNRGAFQ GGRGAFQAGR GGGRGYASQA QFQGRGRGRG
301: QFRGRGRGRG RKGAEKSADD LDKDLESYHA EAMKTN

Best Arabidopsis Sequence Match ( AT5G37720.1 )
(BLAST)

001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: QGGGGRGRVR GGRGGRGPAP TVSRRLPIHN QQGGGMRGGR GGFRARGRGN GGRGRGGGRG NGKKPVEKSA ADLDKDLESY HADAMNTS

Arabidopsis Description

ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.