Factsheet for Zm00001d050357_P005

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15014	Sorghum	nucleus	98.14	97.06
Os08t0427900-01	Rice	nucleus	87.36	82.17
TraesCS2B01G073800.1	Wheat	nucleus	84.39	81.36
TraesCS2A01G060200.1	Wheat	nucleus	83.27	80.58
TraesCS2D01G059800.1	Wheat	nucleus	84.01	80.43
HORVU2Hr1G011700.2	Barley	nucleus	83.27	66.67
GSMUA_Achr5P05950_001	Banana	nucleus	60.97	60.07
GSMUA_Achr2P18730_001	Banana	nucleus	64.31	56.35
VIT_14s0006g01020.t01	Wine grape	nucleus	55.02	55.02
PGSC0003DMT400040562	Potato	nucleus	54.65	52.13
Solyc11g011130.1.1	Tomato	nucleus	54.65	51.94
Solyc04g014460.2.1	Tomato	nucleus	52.42	51.84
PGSC0003DMT400060737	Potato	nucleus	51.67	50.36
KRG97938	Soybean	nucleus	55.02	49.66
KRH30937	Soybean	nucleus	53.9	48.66
CDY01711	Canola	nucleus	49.44	45.39
AT5G37720.1	Thale cress	nucleus	48.33	45.14
Zm00001d037352_P001	Maize	plasma membrane	50.19	44.12
CDY49635	Canola	nucleus, plastid	46.47	43.4
CDY07496	Canola	nucleus, plastid	46.47	43.4
Bra004158.1-P	Field mustard	nucleus, plastid	46.47	43.4
AT1G66260.1	Thale cress	nucleus	46.84	42.71
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	41.26	42.69
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	41.26	42.69
Zm00001d028655_P001	Maize	extracellular, mitochondrion	38.66	41.11
Zm00001d005179_P001	Maize	plastid	31.6	40.67
Zm00001d019234_P002	Maize	extracellular	33.83	36.55
Zm00001d047794_P001	Maize	nucleus	28.25	29.92

Protein Annotations

EntrezGene:100280157	MapMan:16.11.1.2	Gene3D:3.30.70.330	ProteinID:AQK52403.1	ProteinID:AQK52408.1	UniProt:B8A280
EMBL:BT055672	InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR19965
PANTHER:PTHR19965:SF33	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928
UniParc:UPI00019175DB	EnsemblPlantsGene:Zm00001d050357	EnsemblPlants:Zm00001d050357_P005	EnsemblPlants:Zm00001d050357_T005	SEG:seg	:

Description

THO complex subunit 4C

Coordinates

chr4:-:83387448..83392725

Molecular Weight (calculated)

29525.8 Da

IEP (calculated)

11.420

GRAVY (calculated)

-0.824

Length

269 amino acids

Sequence
(BLAST)

001: MSYYERRGGD RGSGRIQGSG GRGGHVLRGR SGLAPRGPLG VNSRPSARTI AKSFSRTKDM TWRPDLFSDS MAASGIETGT KLYISNLDYG VSNEDIKELF
101: SEVGHLKRFA VHYDGYGRPN GTAEVVFTRR SDAIAALKRY NNVLLDGKAM KIEVIGNDLG LPMTPRINVV GASNGRATRT VVMTPEFSQR GRGSSSRPLS
201: NRFNNRGGFQ AGRGRGQFQS WGRGRGQFQS RGRGRAQFQG RGRGRKPEKT ADELDKDLES YHAEAMKTD

Best Arabidopsis Sequence Match ( AT5G37720.2 )
(BLAST)

001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: VRGGRGGRGP APTVSRRLPI HNQQGGGMRG GRGGFRARGR GNGGRGRGGG RGNGKKPVEK SAADLDKDLE SYHADAMNTS

Arabidopsis Description

ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.