Factsheet for Zm00001d028655_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005179_P001
Zm00001d019234_P002
Zm00001d028655_P001
Zm00001d047794_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	Zm00001d005179_P001	AT5G02530.1	21798944
AT5G02530.1	Zm00001d019234_P002	AT5G02530.1	21798944
AT5G02530.1	Zm00001d028655_P001	AT5G02530.1	21798944
AT5G02530.1	Zm00001d047794_P001	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92463	Sorghum	nucleus	95.26	93.77
Os03t0278300-02	Rice	nucleus	81.03	75.09
Zm00001d047794_P001	Maize	nucleus	71.94	71.65
TraesCS4A01G099300.1	Wheat	nucleus	72.73	70.23
TraesCS4B01G205000.1	Wheat	nucleus	73.12	68.52
TraesCS4D01G205900.1	Wheat	nucleus	72.73	68.15
VIT_06s0004g04340.t01	Wine grape	nucleus	58.5	60.91
GSMUA_Achr10P...	Banana	nucleus	57.31	60.67
GSMUA_AchrUn_...	Banana	nucleus	56.92	60.25
Bra020273.1-P	Field mustard	nucleus	51.78	60.09
GSMUA_Achr6P23530_001	Banana	nucleus	56.52	59.83
KRH23040	Soybean	plastid	57.31	59.67
CDY09236	Canola	nucleus	50.99	59.17
KRH29829	Soybean	nucleus	56.13	57.49
Solyc11g073280.1.1	Tomato	nucleus	56.52	56.97
KRH24828	Soybean	nucleus	32.02	56.64
CDX80213	Canola	nucleus	52.17	56.17
CDY31583	Canola	nucleus	52.57	55.65
VIT_13s0019g00640.t01	Wine grape	cytosol	35.18	55.62
Bra002519.1-P	Field mustard	nucleus	52.17	55.46
AT5G59950.5	Thale cress	nucleus	52.57	54.29
PGSC0003DMT400049444	Potato	cytosol	52.57	53.85
PGSC0003DMT400085575	Potato	nucleus, plastid	45.85	53.46
Solyc10g086400.1.1	Tomato	nucleus	49.8	52.72
GSMUA_Achr6P15310_001	Banana	nucleus	48.62	52.34
PGSC0003DMT400049442	Potato	nucleus	43.48	48.67
Bra009581.1-P	Field mustard	nucleus	52.96	48.55
CDY40364	Canola	nucleus	52.96	48.38
CDY10442	Canola	nucleus	51.78	46.95
CDX80828	Canola	nucleus	52.96	46.37
CDY55544	Canola	nucleus	53.36	46.23
AT5G02530.1	Thale cress	plastid	52.57	45.55
KRH75241	Soybean	plastid	23.32	44.36
HORVU4Hr1G059090.4	Barley	plastid	62.06	44.35
KRH07006	Soybean	cytosol	18.18	42.59
Zm00001d019234_P002	Maize	extracellular	39.13	39.76
Bra005728.1-P	Field mustard	nucleus, plastid	51.78	39.22
Zm00001d050357_P005	Maize	plasma membrane	41.11	38.66
Zm00001d005179_P001	Maize	plastid	31.23	37.8
KRH70494	Soybean	nucleus	35.97	34.21
KRH01617	Soybean	nucleus	23.72	29.56
Zm00001d037352_P001	Maize	plasma membrane	35.18	29.09

Protein Annotations

EntrezGene:100279524	MapMan:16.11.1.2	Gene3D:3.30.70.330	UniProt:B6T346	EMBL:BT054393	EMBL:EU959411
EMBL:EU962068	InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONL96647.1	ProteinID:ONL96649.1	PFAM:PF00076
PFAM:PF13865	PFscan:PS50102	PANTHER:PTHR19965	PANTHER:PTHR19965:SF51	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928	UniParc:UPI000182C651	EnsemblPlantsGene:Zm00001d028655	EnsemblPlants:Zm00001d028655_P001
EnsemblPlants:Zm00001d028655_T001	SEG:seg	:	:	:	:

Description

THO complex subunit 4B

Coordinates

chr1:-:41897894..41901691

Molecular Weight (calculated)

26555.1 Da

IEP (calculated)

10.881

GRAVY (calculated)

-0.793

Length

253 amino acids

Sequence
(BLAST)

001: MAETLDMTLD DIIKNNKKSN PSSGGARRSR GGSAPGGGSG GVGPTRRSFK RAGNRQAPYQ PPKAPDAAWQ HDMYPAVAAG GGGGGRVSAL ETGTKLYISN
101: LDFGVSNDDI KELFSELGDL KRFSIIYDRS GRSKGTAEVV FARRSDAVAA VKKYNNVQLD GKPMKIEIVG TNTPTASAAL PVSNGGHARN AVRSAPRGAA
201: PAGVPQRRPH QRGGRRSGGS GGGRRGKERS KPKSAEELDA DLEKYHADAM QTN

Best Arabidopsis Sequence Match ( AT5G59950.5 )
(BLAST)

001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.