Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G02530.1 | EER92463 | AT5G02530.1 | 21798944 |
| AT5G02530.1 | EER98238 | AT5G02530.1 | 21798944 |
| AT5G02530.1 | OQU75650 | AT5G02530.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 93.77 | 95.26 |
| Os03t0278300-02 | Rice | nucleus | 83.27 | 78.39 |
| Zm00001d047794_P001 | Maize | nucleus | 71.6 | 72.44 |
| TraesCS4A01G099300.1 | Wheat | nucleus | 73.54 | 72.14 |
| TraesCS4B01G205000.1 | Wheat | nucleus | 74.71 | 71.11 |
| TraesCS4D01G205900.1 | Wheat | nucleus | 74.32 | 70.74 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 59.53 | 62.96 |
| GSMUA_Achr10P... | Banana | nucleus | 58.37 | 62.76 |
| GSMUA_AchrUn_... | Banana | nucleus | 57.59 | 61.92 |
| GSMUA_Achr6P23530_001 | Banana | nucleus | 57.59 | 61.92 |
| KRH23040 | Soybean | plastid | 56.42 | 59.67 |
| Bra020273.1-P | Field mustard | nucleus | 50.58 | 59.63 |
| CDY09236 | Canola | nucleus | 49.81 | 58.72 |
| Solyc11g073280.1.1 | Tomato | nucleus | 56.81 | 58.17 |
| KRH29829 | Soybean | nucleus | 54.86 | 57.09 |
| KRH24828 | Soybean | nucleus | 31.52 | 56.64 |
| CDX80213 | Canola | nucleus | 51.36 | 56.17 |
| AT5G59950.5 | Thale cress | nucleus | 53.31 | 55.92 |
| CDY31583 | Canola | nucleus | 51.75 | 55.65 |
| Bra002519.1-P | Field mustard | nucleus | 51.36 | 55.46 |
| PGSC0003DMT400049444 | Potato | cytosol | 52.92 | 55.06 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 34.24 | 55.0 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 45.91 | 54.38 |
| Solyc10g086400.1.1 | Tomato | nucleus | 50.19 | 53.97 |
| GSMUA_Achr6P15310_001 | Banana | nucleus | 49.03 | 53.62 |
| PGSC0003DMT400049442 | Potato | nucleus | 43.97 | 50.0 |
| Bra009581.1-P | Field mustard | nucleus | 53.31 | 49.64 |
| CDY40364 | Canola | nucleus | 53.31 | 49.46 |
| CDY10442 | Canola | nucleus | 52.14 | 48.03 |
| CDY55544 | Canola | nucleus | 54.47 | 47.95 |
| CDX80828 | Canola | nucleus | 53.7 | 47.75 |
| AT5G02530.1 | Thale cress | plastid | 54.09 | 47.6 |
| HORVU4Hr1G059090.4 | Barley | plastid | 62.65 | 45.48 |
| KRH75241 | Soybean | plastid | 22.96 | 44.36 |
| KRH07006 | Soybean | cytosol | 17.51 | 41.67 |
| EER98238 | Sorghum | nucleus, plastid | 40.86 | 41.18 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 52.92 | 40.72 |
| EES15014 | Sorghum | nucleus | 41.63 | 39.34 |
| KRH70494 | Soybean | nucleus | 35.8 | 34.59 |
| EER89547 | Sorghum | nucleus | 40.86 | 34.2 |
| OQU75650 | Sorghum | nucleus | 21.4 | 32.16 |
| KRH01617 | Soybean | nucleus | 23.74 | 30.05 |
Protein Annotations
| MapMan:16.11.1.2 | Gene3D:3.30.70.330 | EntrezGene:8084918 | UniProt:C5WPD6 | EnsemblPlants:EER92463 | ProteinID:EER92463 |
| ProteinID:EER92463.1 | InterPro:FoP_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OQU92812.1 | PFAM:PF00076 | PFAM:PF13865 |
| PFscan:PS50102 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF51 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SMART:SM01218 | EnsemblPlantsGene:SORBI_3001G417900 | SUPFAM:SSF54928 | unigene:Sbi.2050 | UniParc:UPI0001A82C7E | RefSeq:XP_002465465.1 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:69884975..69888884
Molecular Weight (calculated)
26759.3 Da
IEP (calculated)
10.776
GRAVY (calculated)
-0.828
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETLDMTLD DIIKNNKKSN SSSGGGRRSR GGSAPGGGGG GGSGGVGPTR RPFKRAGNRQ APYQPPKAPD VAWQHDMYPA VAAGGGGGGR VSALETGTKL
101: YISNLDFGVS NEDIKELFSE LGDLKRYSIN YDRSGRSKGT AEVVFARRSD AVAAVKKYNN VQLDGKPMKI EIVGTNTPTA AAALPVSNGG HARNAARSAP
201: RGAAPAGMPQ RRPHQRGGRR GGGSGGGRRG KERSTPKSAE ELDADLEKYH ADAMQTN
101: YISNLDFGVS NEDIKELFSE LGDLKRYSIN YDRSGRSKGT AEVVFARRSD AVAAVKKYNN VQLDGKPMKI EIVGTNTPTA AAALPVSNGG HARNAARSAP
201: RGAAPAGMPQ RRPHQRGGRR GGGSGGGRRG KERSTPKSAE ELDADLEKYH ADAMQTN
001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.