Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0004g04340.t01 | |
| VIT_13s0019g00640.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G02530.1 | VIT_06s0004g04340.t01 | AT5G02530.1 | 21798944 |
| AT5G02530.1 | VIT_13s0019g00640.t01 | AT5G02530.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 62.5 | 41.15 |
| GSMUA_Achr6P23530_001 | Banana | nucleus | 61.25 | 41.0 |
| Bra020273.1-P | Field mustard | nucleus | 55.62 | 40.83 |
| GSMUA_Achr10P... | Banana | nucleus | 60.62 | 40.59 |
| GSMUA_Achr6P15310_001 | Banana | nucleus | 58.75 | 40.0 |
| CDY09236 | Canola | nucleus | 54.38 | 39.91 |
| GSMUA_AchrUn_... | Banana | nucleus | 59.38 | 39.75 |
| Os11t0100200-00 | Rice | nucleus | 53.75 | 39.27 |
| Os12t0100100-01 | Rice | nucleus, plastid | 54.38 | 38.16 |
| CDX80213 | Canola | nucleus | 53.75 | 36.6 |
| AT5G59950.5 | Thale cress | nucleus | 55.62 | 36.33 |
| Bra002519.1-P | Field mustard | nucleus | 53.75 | 36.13 |
| KRH07006 | Soybean | cytosol | 24.38 | 36.11 |
| CDY31583 | Canola | nucleus | 53.75 | 35.98 |
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 55.62 | 35.18 |
| Bra009581.1-P | Field mustard | nucleus | 60.0 | 34.78 |
| CDY40364 | Canola | nucleus | 60.0 | 34.66 |
| CDY10442 | Canola | nucleus | 60.0 | 34.41 |
| EER92463 | Sorghum | nucleus | 55.0 | 34.24 |
| Zm00001d047794_P001 | Maize | nucleus | 53.75 | 33.86 |
| AT5G02530.1 | Thale cress | plastid | 61.25 | 33.56 |
| CDX80828 | Canola | nucleus | 60.0 | 33.22 |
| Os03t0278300-02 | Rice | nucleus | 55.62 | 32.6 |
| CDY55544 | Canola | nucleus | 59.38 | 32.53 |
| HORVU5Hr1G049430.2 | Barley | nucleus | 56.88 | 32.38 |
| TraesCS5D01G163300.1 | Wheat | nucleus | 55.62 | 32.25 |
| TraesCS5A01G157900.1 | Wheat | nucleus | 55.62 | 32.25 |
| OQU75650 | Sorghum | nucleus | 34.38 | 32.16 |
| TraesCS5B01G155800.1 | Wheat | nucleus | 55.62 | 32.13 |
| Zm00001d019234_P002 | Maize | extracellular | 48.12 | 30.92 |
| TraesCS4A01G099300.1 | Wheat | nucleus | 50.0 | 30.53 |
| TraesCS4A01G178200.1 | Wheat | nucleus, plastid | 49.38 | 30.38 |
| EER98238 | Sorghum | nucleus, plastid | 48.12 | 30.2 |
| TraesCS4B01G205000.1 | Wheat | nucleus | 50.62 | 30.0 |
| TraesCS4D01G133000.1 | Wheat | plastid | 48.75 | 30.0 |
| TraesCS4B01G138300.1 | Wheat | nucleus, plastid | 49.38 | 29.48 |
| TraesCS4D01G205900.1 | Wheat | nucleus | 49.38 | 29.26 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 59.38 | 28.44 |
| Zm00001d005179_P001 | Maize | plastid | 36.88 | 28.23 |
| KRH70494 | Soybean | nucleus | 46.88 | 28.2 |
| VIT_14s0006g01020.t01 | Wine grape | nucleus | 45.62 | 27.14 |
| TraesCS2D01G240400.1 | Wheat | nucleus, plastid | 44.38 | 26.39 |
| TraesCS2B01G261300.1 | Wheat | nucleus, plastid | 44.38 | 26.3 |
| HORVU4Hr1G024270.1 | Barley | plastid | 48.75 | 25.49 |
| TraesCS2A01G244000.1 | Wheat | nucleus | 35.0 | 24.35 |
| Os07t0237100-00 | Rice | nucleus | 48.12 | 22.65 |
| KRH01617 | Soybean | nucleus | 28.12 | 22.17 |
| HORVU4Hr1G059090.4 | Barley | plastid | 47.5 | 21.47 |
| HORVU2Hr1G056980.6 | Barley | nucleus | 30.0 | 15.34 |
Protein Annotations
| EntrezGene:100258168 | wikigene:100258168 | MapMan:16.11.1.2 | Gene3D:3.30.70.330 | ProteinID:CBI31707 | ProteinID:CBI31707.3 |
| UniProt:D7TLX0 | EMBL:FN595998 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100258168 | wikigene:LOC100258168 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF36 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000198474D | ArrayExpress:VIT_13s0019g00640 | EnsemblPlantsGene:VIT_13s0019g00640 | EnsemblPlants:VIT_13s0019g00640.t01 | RefSeq:XP_002279224 |
| RefSeq:XP_002279224.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr13:+:2599623..2601967
Molecular Weight (calculated)
17513.9 Da
IEP (calculated)
8.790
GRAVY (calculated)
-0.389
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MPDPLDMSLD EIIRNKKKSA GVSSNVRGIG SGPGPGPARR FGNRELLRTT PYSVAPVFQV LEAAWKQEVF TGGVSTMETG TKLYISNLEY GVSNDDIKEL
101: FSEVGELKQY SIHYDKSGIS KGTGEVVFLR QTDALAAIKR YNNVQLDGKP QKIDLIGANF
101: FSEVGELKQY SIHYDKSGIS KGTGEVVFLR QTDALAAIKR YNNVQLDGKP QKIDLIGANF
001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GGFMGRPRGG GFGGGNFRGG RGARGRGGRG SGGRGRDENV SAEDLDAELD KYHKEAMETS
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GGFMGRPRGG GFGGGNFRGG RGARGRGGRG SGGRGRDENV SAEDLDAELD KYHKEAMETS
Arabidopsis Description
ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.