Factsheet for Bra009581.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005728.1-P
Bra009581.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	Bra005728.1-P	AT5G02530.1	21798944
AT5G02530.1	Bra009581.1-P	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40364	Canola	nucleus	98.91	98.56
CDY10442	Canola	nucleus	95.65	94.62
AT5G02530.1	Thale cress	plastid	84.42	79.79
Bra005728.1-P	Field mustard	nucleus, plastid	85.87	70.96
VIT_06s0004g04340.t01	Wine grape	nucleus	56.88	64.61
KRH24828	Soybean	nucleus	32.97	63.64
Solyc11g073280.1.1	Tomato	nucleus	56.88	62.55
GSMUA_Achr6P23530_001	Banana	nucleus	53.99	62.34
GSMUA_Achr10P...	Banana	nucleus	53.99	62.34
Bra020273.1-P	Field mustard	nucleus	48.91	61.93
GSMUA_AchrUn_...	Banana	nucleus	53.26	61.51
KRH29829	Soybean	nucleus	54.71	61.13
KRH23040	Soybean	plastid	53.26	60.49
Bra002519.1-P	Field mustard	nucleus	51.81	60.08
VIT_13s0019g00640.t01	Wine grape	cytosol	34.78	60.0
Solyc10g086400.1.1	Tomato	nucleus	50.0	57.74
PGSC0003DMT400085575	Potato	nucleus, plastid	44.93	57.14
PGSC0003DMT400049444	Potato	cytosol	51.09	57.09
Os11t0100200-00	Rice	nucleus	45.29	57.08
Os12t0100100-01	Rice	nucleus, plastid	46.01	55.7
EER92463	Sorghum	nucleus	49.64	53.31
Zm00001d028655_P001	Maize	extracellular, mitochondrion	48.55	52.96
GSMUA_Achr6P15310_001	Banana	nucleus	43.84	51.49
Os03t0278300-02	Rice	nucleus	50.0	50.55
PGSC0003DMT400049442	Potato	nucleus	41.3	50.44
TraesCS5D01G163300.1	Wheat	nucleus	50.36	50.36
TraesCS5A01G157900.1	Wheat	nucleus	49.64	49.64
TraesCS4A01G099300.1	Wheat	nucleus	47.1	49.62
HORVU5Hr1G049430.2	Barley	nucleus	50.36	49.47
TraesCS5B01G155800.1	Wheat	nucleus	49.64	49.46
TraesCS4B01G205000.1	Wheat	nucleus	47.46	48.52
TraesCS4D01G205900.1	Wheat	nucleus	46.74	47.78
KRH75241	Soybean	plastid	22.83	47.37
TraesCS4D01G133000.1	Wheat	plastid	43.12	45.77
TraesCS4A01G178200.1	Wheat	nucleus, plastid	43.12	45.77
TraesCS4B01G138300.1	Wheat	nucleus, plastid	44.2	45.52
Zm00001d047794_P001	Maize	nucleus	40.94	44.49
KRH07006	Soybean	cytosol	17.39	44.44
Zm00001d019234_P002	Maize	extracellular	39.86	44.18
EER98238	Sorghum	nucleus, plastid	39.86	43.14
Zm00001d005179_P001	Maize	plastid	31.88	42.11
HORVU4Hr1G024270.1	Barley	plastid	44.57	40.2
TraesCS2D01G240400.1	Wheat	nucleus, plastid	38.41	39.41
TraesCS2B01G261300.1	Wheat	nucleus, plastid	38.41	39.26
KRH70494	Soybean	nucleus	36.23	37.59
TraesCS2A01G244000.1	Wheat	nucleus	30.43	36.52
Bra004158.1-P	Field mustard	nucleus, plastid	36.96	35.42
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	32.25	34.23
KRH01617	Soybean	nucleus	24.64	33.5
OQU75650	Sorghum	nucleus	20.65	33.33
HORVU4Hr1G059090.4	Barley	plastid	42.03	32.77
Os07t0237100-00	Rice	nucleus	38.77	31.47
HORVU2Hr1G056980.6	Barley	nucleus	24.28	21.41

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra009581	EnsemblPlants:Bra009581.1	EnsemblPlants:Bra009581.1-P	InterPro:FoP_C
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4CZD4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF13865	PFscan:PS50102	PANTHER:PTHR19965
PANTHER:PTHR19965:SF51	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928
UniParc:UPI0002547D0E	SEG:seg	:	:	:	:

Description

AT5G02530 (E=2e-068) | RNA and export factor-binding protein, putative

Coordinates

chrA10:+:17299319..17300506

Molecular Weight (calculated)

29222.0 Da

IEP (calculated)

10.381

GRAVY (calculated)

-0.732

Length

276 amino acids

Sequence
(BLAST)

001: MAGGLDMSLD DLIKSNRKPT GSRGRGNGGS SRFGGGSGPS RRFSNRVGNR TAPYSRPLQQ QQAQDPMWQN DVFATDASVA AAFGNQSGGF GSVGGGSSIE
101: TGTKLYISNL DYGVSNEDIK ELFSEVGDLK RYGLHYDKSG RSKGTAEVVF SRRGDALAAV KRYNNVQLDG KLMKIEIVGT NLSAPTPTTP LAPVQFPFPS
201: NGILGNFNEN YNGGFNGNFR GRGGFMGRPR GGNFRGGRGG RGGGGRGSGR GRDEKVSAED LDAELDKYHK AAMETS

Best Arabidopsis Sequence Match ( AT5G02530.2 )
(BLAST)

001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GGFMGRPRGG GFGGGNFRGG RGARGRGGRG SGGRGRDENV SAEDLDAELD KYHKEAMETS

Arabidopsis Description

ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.