Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr6P15310_001 | |
| GSMUA_Achr6P23530_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 89.12 | 89.12 |
| GSMUA_AchrUn_... | Banana | nucleus | 84.94 | 84.94 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 74.9 | 73.66 |
| KRH23040 | Soybean | plastid | 71.97 | 70.78 |
| KRH29829 | Soybean | nucleus | 70.71 | 68.42 |
| GSMUA_Achr6P15310_001 | Banana | nucleus | 66.95 | 68.09 |
| KRH24828 | Soybean | nucleus | 40.17 | 67.13 |
| Solyc11g073280.1.1 | Tomato | nucleus | 69.46 | 66.14 |
| CDX80213 | Canola | nucleus | 62.34 | 63.4 |
| Bra020273.1-P | Field mustard | nucleus | 57.32 | 62.84 |
| Bra002519.1-P | Field mustard | nucleus | 61.92 | 62.18 |
| CDY09236 | Canola | nucleus | 56.49 | 61.93 |
| CDY31583 | Canola | nucleus | 61.51 | 61.51 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 41.0 | 61.25 |
| AT5G59950.5 | Thale cress | nucleus | 62.34 | 60.82 |
| Solyc10g086400.1.1 | Tomato | nucleus | 60.25 | 60.25 |
| PGSC0003DMT400049444 | Potato | cytosol | 61.51 | 59.51 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 53.97 | 59.45 |
| EER92463 | Sorghum | nucleus | 61.92 | 57.59 |
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 59.83 | 56.52 |
| AT5G02530.1 | Thale cress | plastid | 66.95 | 54.79 |
| Bra009581.1-P | Field mustard | nucleus | 62.34 | 53.99 |
| CDY40364 | Canola | nucleus | 62.34 | 53.79 |
| CDY10442 | Canola | nucleus | 62.76 | 53.76 |
| CDX80828 | Canola | nucleus | 64.85 | 53.63 |
| PGSC0003DMT400049442 | Potato | nucleus | 50.63 | 53.54 |
| Os03t0278300-02 | Rice | nucleus | 61.09 | 53.48 |
| CDY55544 | Canola | nucleus | 65.27 | 53.42 |
| TraesCS4A01G099300.1 | Wheat | nucleus | 55.23 | 50.38 |
| KRH75241 | Soybean | plastid | 27.62 | 49.62 |
| TraesCS4B01G205000.1 | Wheat | nucleus | 55.65 | 49.26 |
| TraesCS4D01G205900.1 | Wheat | nucleus | 54.81 | 48.52 |
| Zm00001d047794_P001 | Maize | nucleus | 49.37 | 46.46 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 63.18 | 45.21 |
| GSMUA_Achr5P05950_001 | Banana | nucleus | 51.46 | 45.05 |
| KRH07006 | Soybean | cytosol | 19.25 | 42.59 |
| GSMUA_Achr2P18730_001 | Banana | nucleus | 51.88 | 40.39 |
| KRH70494 | Soybean | nucleus | 38.91 | 34.96 |
| KRH01617 | Soybean | nucleus | 28.03 | 33.0 |
| HORVU4Hr1G059090.4 | Barley | plastid | 48.54 | 32.77 |
Protein Annotations
| MapMan:16.11.1.2 | Gene3D:3.30.70.330 | InterPro:FoP_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | EnsemblPlantsGene:GSMUA_Achr6G23530_001 | EnsemblPlants:GSMUA_Achr6P23530_001 | EnsemblPlants:GSMUA_Achr6T23530_001 | InterPro:IPR000504 | InterPro:IPR012677 |
| UniProt:M0T9K1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF13865 | PFscan:PS50102 | PANTHER:PTHR19965 |
| PANTHER:PTHR19965:SF51 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 |
| UniParc:UPI0002949007 | SEG:seg | : | : | : | : |
Description
Putative RNA and export factor-binding protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G23530_001]
Coordinates
chr6:+:23737163..23741945
Molecular Weight (calculated)
25236.6 Da
IEP (calculated)
10.670
GRAVY (calculated)
-0.703
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSALDMSLD DIIKNNKKST PGGRGRGRGS GAGPARRVPN RSANRSAPYS VAKVRFMAPD SAWQHDKYAA QTGALPAPAG RASSIETGTK LYISNLEYGV
101: SNEDIKELFS EVGDLKRYSI NYDRSGRSKG TAEVVFSRRA DALAAVKRYN NVLLDGKPMK IEVIGTNIST PAAIPQSVFG NFNGSSKSTG PGRGSTGPQG
201: GGRGRGRGRG RGKGRGEPVS ADALDADLDK YHAEAMQTN
101: SNEDIKELFS EVGDLKRYSI NYDRSGRSKG TAEVVFSRRA DALAAVKRYN NVLLDGKPMK IEVIGTNIST PAAIPQSVFG NFNGSSKSTG PGRGSTGPQG
201: GGRGRGRGRG RGKGRGEPVS ADALDADLDK YHAEAMQTN
001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.