CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01617
KRH07006
KRH23040
KRH24828
KRH29829
KRH70494
KRH75241

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	KRH01617	AT5G02530.1	21798944
AT5G02530.1	KRH07006	AT5G02530.1	21798944
AT5G02530.1	KRH23040	AT5G02530.1	21798944
AT5G02530.1	KRH24828	AT5G02530.1	21798944
AT5G02530.1	KRH29829	AT5G02530.1	21798944
AT5G02530.1	KRH70494	AT5G02530.1	21798944
AT5G02530.1	KRH75241	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24828	Soybean	nucleus	55.06	95.1
KRH23040	Soybean	plastid	78.54	79.84
VIT_06s0004g04340.t01	Wine grape	nucleus	73.28	74.49
GSMUA_Achr6P23530_001	Banana	nucleus	68.42	70.71
GSMUA_Achr10P...	Banana	nucleus	67.21	69.46
Solyc11g073280.1.1	Tomato	nucleus	68.83	67.73
GSMUA_AchrUn_...	Banana	nucleus	65.18	67.36
CDX80213	Canola	nucleus	62.35	65.53
CDY31583	Canola	nucleus	62.75	64.85
Bra002519.1-P	Field mustard	nucleus	61.94	64.29
Bra020273.1-P	Field mustard	nucleus	56.28	63.76
PGSC0003DMT400085575	Potato	nucleus, plastid	55.47	63.13
CDY09236	Canola	nucleus	55.47	62.84
AT5G59950.5	Thale cress	nucleus	59.51	60.0
Os11t0100200-00	Rice	nucleus	52.63	59.36
Os12t0100100-01	Rice	nucleus, plastid	54.25	58.77
KRH75241	Soybean	plastid	31.17	57.89
Zm00001d028655_P001	Maize	extracellular, mitochondrion	57.49	56.13
GSMUA_Achr6P15310_001	Banana	nucleus	53.04	55.74
AT5G02530.1	Thale cress	plastid	65.18	55.14
EER92463	Sorghum	nucleus	57.09	54.86
CDY10442	Canola	nucleus	61.94	54.84
Bra009581.1-P	Field mustard	nucleus	61.13	54.71
CDY40364	Canola	nucleus	61.13	54.51
CDX80828	Canola	nucleus	63.16	53.98
Os03t0278300-02	Rice	nucleus	59.51	53.85
CDY55544	Canola	nucleus	63.56	53.77
TraesCS4A01G099300.1	Wheat	nucleus	54.66	51.53
TraesCS5D01G163300.1	Wheat	nucleus	56.68	50.72
TraesCS5A01G157900.1	Wheat	nucleus	56.68	50.72
TraesCS5B01G155800.1	Wheat	nucleus	56.68	50.54
TraesCS4B01G205000.1	Wheat	nucleus	55.06	50.37
HORVU5Hr1G049430.2	Barley	nucleus	57.09	50.18
TraesCS4D01G205900.1	Wheat	nucleus	54.25	49.63
Bra005728.1-P	Field mustard	nucleus, plastid	61.54	45.51
KRH07006	Soybean	cytosol	19.84	45.37
Zm00001d047794_P001	Maize	nucleus	46.15	44.88
TraesCS4A01G178200.1	Wheat	nucleus, plastid	46.56	44.23
TraesCS4D01G133000.1	Wheat	plastid	46.15	43.85
TraesCS4B01G138300.1	Wheat	nucleus, plastid	47.37	43.66
Zm00001d019234_P002	Maize	extracellular	42.11	41.77
EER98238	Sorghum	nucleus, plastid	42.11	40.78
KRH30937	Soybean	nucleus	47.37	39.26
KRG97938	Soybean	nucleus	47.37	39.26
Zm00001d005179_P001	Maize	plastid	33.2	39.23
TraesCS2D01G240400.1	Wheat	nucleus, plastid	42.11	38.66
HORVU4Hr1G024270.1	Barley	plastid	47.77	38.56
TraesCS2B01G261300.1	Wheat	nucleus, plastid	42.11	38.52
KRH70494	Soybean	nucleus	40.49	37.59
TraesCS2A01G244000.1	Wheat	nucleus	34.41	36.96
KRH01617	Soybean	nucleus	29.15	35.47
HORVU4Hr1G059090.4	Barley	plastid	48.18	33.62
OQU75650	Sorghum	nucleus	22.27	32.16
Os07t0237100-00	Rice	nucleus	43.32	31.47
HORVU2Hr1G056980.6	Barley	nucleus	27.94	22.04

Protein Annotations

EntrezGene:100817317	MapMan:16.11.1.2	Gene3D:3.30.70.330	EMBL:ACUP02006828	InterPro:FoP_C	EnsemblPlantsGene:GLYMA_11G141500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1LK48	InterPro:IPR000504
InterPro:IPR012677	EnsemblPlants:KRH29829	ProteinID:KRH29829	ProteinID:KRH29829.1	ProteinID:KRH29830.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF13865	PFscan:PS50102	PANTHER:PTHR19965	PANTHER:PTHR19965:SF51	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928	UniParc:UPI0000E6474E	SEG:seg

Description

hypothetical protein

Coordinates

chr11:-:10802687..10807805

Molecular Weight (calculated)

26181.6 Da

IEP (calculated)

10.650

GRAVY (calculated)

-0.740

Length

247 amino acids

Sequence
(BLAST)

001: MSAAMDMSLD DIIKNNKKSG SGSSRGRIRP SGSGPSRRFP NRAANRAAPY ATAKAPEATW QHDLYADQQV AAAGYPAQGG RAASIETGTK LYISNLDYGV
101: SSDDIKELFA EVGDLKRHAV HYDRSGRSKG TAEVVFSRRA DAVAAVKRYN NVQLDGKPMK IEIVGTNIST PGVAPARNGA IGNFDGVPRS GQGRGGALRR
201: PGGRGQGVRR DRGRGRGRGG AGRGEKVSAD DLDADLEKYH AEAMQLN

Best Arabidopsis Sequence Match ( AT5G59950.5 )
(BLAST)

001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.