Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr6P15310_001 | |
| GSMUA_Achr6P23530_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 89.12 | 89.12 |
| GSMUA_Achr6P23530_001 | Banana | nucleus | 84.94 | 84.94 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 72.38 | 71.19 |
| KRH23040 | Soybean | plastid | 70.71 | 69.55 |
| GSMUA_Achr6P15310_001 | Banana | nucleus | 65.69 | 66.81 |
| KRH24828 | Soybean | nucleus | 39.33 | 65.73 |
| Solyc11g073280.1.1 | Tomato | nucleus | 68.62 | 65.34 |
| KRH29829 | Soybean | nucleus | 67.36 | 65.18 |
| CDX80213 | Canola | nucleus | 61.92 | 62.98 |
| CDY31583 | Canola | nucleus | 61.92 | 61.92 |
| Bra002519.1-P | Field mustard | nucleus | 61.51 | 61.76 |
| Bra020273.1-P | Field mustard | nucleus | 56.07 | 61.47 |
| AT5G59950.5 | Thale cress | nucleus | 62.76 | 61.22 |
| CDY09236 | Canola | nucleus | 55.23 | 60.55 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 54.39 | 59.91 |
| Solyc10g086400.1.1 | Tomato | nucleus | 59.41 | 59.41 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 39.75 | 59.38 |
| PGSC0003DMT400049444 | Potato | cytosol | 60.67 | 58.7 |
| EER92463 | Sorghum | nucleus | 61.92 | 57.59 |
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 60.25 | 56.92 |
| PGSC0003DMT400049442 | Potato | nucleus | 51.05 | 53.98 |
| AT5G02530.1 | Thale cress | plastid | 65.27 | 53.42 |
| CDY10442 | Canola | nucleus | 62.34 | 53.41 |
| Bra009581.1-P | Field mustard | nucleus | 61.51 | 53.26 |
| CDY40364 | Canola | nucleus | 61.51 | 53.07 |
| Os03t0278300-02 | Rice | nucleus | 60.25 | 52.75 |
| CDX80828 | Canola | nucleus | 63.18 | 52.25 |
| CDY55544 | Canola | nucleus | 63.6 | 52.05 |
| TraesCS4A01G099300.1 | Wheat | nucleus | 55.23 | 50.38 |
| TraesCS4B01G205000.1 | Wheat | nucleus | 55.65 | 49.26 |
| TraesCS4D01G205900.1 | Wheat | nucleus | 54.81 | 48.52 |
| Zm00001d047794_P001 | Maize | nucleus | 50.63 | 47.64 |
| KRH75241 | Soybean | plastid | 25.94 | 46.62 |
| GSMUA_Achr5P05950_001 | Banana | nucleus | 51.46 | 45.05 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 61.51 | 44.01 |
| KRH07006 | Soybean | cytosol | 19.25 | 42.59 |
| GSMUA_Achr2P18730_001 | Banana | nucleus | 51.46 | 40.07 |
| KRH70494 | Soybean | nucleus | 39.33 | 35.34 |
| KRH01617 | Soybean | nucleus | 29.29 | 34.48 |
| HORVU4Hr1G059090.4 | Barley | plastid | 48.12 | 32.49 |
Protein Annotations
| MapMan:16.11.1.2 | Gene3D:3.30.70.330 | InterPro:FoP_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | EnsemblPlantsGene:GSMUA_AchrUn_randomG20650_001 | EnsemblPlants:GSMUA_AchrUn_randomP20650_001 | EnsemblPlants:GSMUA_AchrUn_randomT20650_001 | InterPro:IPR000504 | InterPro:IPR012677 |
| UniProt:M0UAX4 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF13865 | PFscan:PS50102 | PANTHER:PTHR19965 |
| PANTHER:PTHR19965:SF51 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 |
| UniParc:UPI000296B134 | SEG:seg | : | : | : | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG20650_001]
Coordinates
chrchrUn_random:-:99785138..99788326
Molecular Weight (calculated)
25282.7 Da
IEP (calculated)
10.567
GRAVY (calculated)
-0.645
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGLDMSLD DIIKNNKKSA AGGRGRGRGS GTGPARRVPN RSANRSAPYS FGKAPDSAWQ HDIYAAPMGG FLAPAARASS IETGTKLYIS NLEYGVSNED
101: IKELFSEVGD LKRYSVNYDR SGRSKGTAEV VFSRRADALA AVKRYNNVLL DGKPMQIEII GINIPTPAAV PQFSNGVFGN PNGAPKRTGP GRVSAGWPRG
201: GGRGRGKGRG QGRGRGEPVS AAALDADLDK YHEEAMQTN
101: IKELFSEVGD LKRYSVNYDR SGRSKGTAEV VFSRRADALA AVKRYNNVLL DGKPMQIEII GINIPTPAAV PQFSNGVFGN PNGAPKRTGP GRVSAGWPRG
201: GGRGRGKGRG QGRGRGEPVS AAALDADLDK YHEEAMQTN
001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRGG QGRGGQQRGG
201: GRGGGGRGGG GRGRRPGKGP AEKISAEDLD ADLDKYHSGD METN
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRGG QGRGGQQRGG
201: GRGGGGRGGG GRGRRPGKGP AEKISAEDLD ADLDKYHSGD METN
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.