Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55544 | Canola | nucleus | 87.67 | 87.67 |
| CDX80828 | Canola | nucleus | 85.62 | 86.51 |
| CDY10442 | Canola | nucleus | 81.51 | 85.3 |
| Bra009581.1-P | Field mustard | nucleus | 79.79 | 84.42 |
| CDY40364 | Canola | nucleus | 79.79 | 84.12 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 85.96 | 75.15 |
| KRH24828 | Soybean | nucleus | 33.56 | 68.53 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 56.16 | 67.49 |
| GSMUA_Achr6P23530_001 | Banana | nucleus | 54.79 | 66.95 |
| GSMUA_Achr10P... | Banana | nucleus | 54.11 | 66.11 |
| GSMUA_AchrUn_... | Banana | nucleus | 53.42 | 65.27 |
| KRH29829 | Soybean | nucleus | 55.14 | 65.18 |
| KRH23040 | Soybean | plastid | 52.74 | 63.37 |
| Solyc11g073280.1.1 | Tomato | nucleus | 53.77 | 62.55 |
| AT5G59950.5 | Thale cress | nucleus | 52.05 | 62.04 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 33.56 | 61.25 |
| Solyc10g086400.1.1 | Tomato | nucleus | 48.29 | 59.0 |
| Os11t0100200-00 | Rice | nucleus | 44.18 | 58.9 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 43.15 | 58.06 |
| PGSC0003DMT400049444 | Potato | cytosol | 48.63 | 57.49 |
| Os12t0100100-01 | Rice | nucleus, plastid | 44.86 | 57.46 |
| EER92463 | Sorghum | nucleus | 47.6 | 54.09 |
| GSMUA_Achr6P15310_001 | Banana | nucleus | 43.49 | 54.04 |
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 45.55 | 52.57 |
| Os03t0278300-02 | Rice | nucleus | 48.97 | 52.38 |
| TraesCS5D01G163300.1 | Wheat | nucleus | 48.63 | 51.45 |
| HORVU5Hr1G049430.2 | Barley | nucleus | 49.32 | 51.25 |
| PGSC0003DMT400049442 | Potato | nucleus | 39.38 | 50.88 |
| TraesCS5A01G157900.1 | Wheat | nucleus | 47.95 | 50.72 |
| TraesCS5B01G155800.1 | Wheat | nucleus | 47.95 | 50.54 |
| TraesCS4A01G099300.1 | Wheat | nucleus | 44.18 | 49.24 |
| TraesCS4B01G205000.1 | Wheat | nucleus | 44.86 | 48.52 |
| TraesCS4D01G133000.1 | Wheat | plastid | 42.81 | 48.08 |
| TraesCS4D01G205900.1 | Wheat | nucleus | 44.18 | 47.78 |
| TraesCS4A01G178200.1 | Wheat | nucleus, plastid | 42.47 | 47.69 |
| KRH75241 | Soybean | plastid | 21.58 | 47.37 |
| TraesCS4B01G138300.1 | Wheat | nucleus, plastid | 43.15 | 47.01 |
| KRH07006 | Soybean | cytosol | 16.44 | 44.44 |
| Zm00001d019234_P002 | Maize | extracellular | 37.67 | 44.18 |
| Zm00001d047794_P001 | Maize | nucleus | 38.36 | 44.09 |
| EER98238 | Sorghum | nucleus, plastid | 37.33 | 42.75 |
| HORVU4Hr1G024270.1 | Barley | plastid | 43.84 | 41.83 |
| Zm00001d005179_P001 | Maize | plastid | 29.79 | 41.63 |
| AT1G66260.1 | Thale cress | nucleus | 39.73 | 39.32 |
| TraesCS2D01G240400.1 | Wheat | nucleus, plastid | 35.96 | 39.03 |
| TraesCS2B01G261300.1 | Wheat | nucleus, plastid | 35.96 | 38.89 |
| AT5G37720.1 | Thale cress | nucleus | 38.36 | 38.89 |
| KRH70494 | Soybean | nucleus | 35.27 | 38.72 |
| TraesCS2A01G244000.1 | Wheat | nucleus | 29.11 | 36.96 |
| KRH01617 | Soybean | nucleus | 23.97 | 34.48 |
| OQU75650 | Sorghum | nucleus | 19.86 | 33.92 |
| HORVU4Hr1G059090.4 | Barley | plastid | 40.07 | 33.05 |
| Os07t0237100-00 | Rice | nucleus | 38.36 | 32.94 |
| HORVU2Hr1G056980.6 | Barley | nucleus | 23.29 | 21.73 |
Protein Annotations
| MapMan:16.11.1.2 | Gene3D:3.30.70.330 | EntrezGene:831923 | ProteinID:AED90485.1 | ProteinID:AED90486.1 | ArrayExpress:AT5G02530 |
| EnsemblPlantsGene:AT5G02530 | RefSeq:AT5G02530 | TAIR:AT5G02530 | RefSeq:AT5G02530-TAIR-G | EnsemblPlants:AT5G02530.1 | TAIR:AT5G02530.1 |
| EMBL:AY140010 | EMBL:BT006323 | ProteinID:CAB85990.1 | InterPro:FoP_C | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0051028 |
| InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001190207.1 | RefSeq:NP_195873.2 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF13865 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF51 | UniProt:Q8L719 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 | UniParc:UPI00000A292C | SEG:seg |
Description
ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
Coordinates
chr5:-:564085..565925
Molecular Weight (calculated)
30781.8 Da
IEP (calculated)
10.507
GRAVY (calculated)
-0.675
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GRGGFMGRPR GGGFGGGNFR GGRGARGRGG RGSGGRGRDE NVSAEDLDAE LDKYHKEAME TS
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GRGGFMGRPR GGGFGGGNFR GGRGARGRGG RGSGGRGRDE NVSAEDLDAE LDKYHKEAME TS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.