Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G178200.1 | Wheat | nucleus, plastid | 96.92 | 96.92 |
| TraesCS4B01G138300.1 | Wheat | nucleus, plastid | 96.92 | 94.03 |
| HORVU4Hr1G024270.1 | Barley | plastid | 93.08 | 79.08 |
| Os11t0100200-00 | Rice | nucleus | 52.69 | 62.56 |
| Os12t0100100-01 | Rice | nucleus, plastid | 52.31 | 59.65 |
| TraesCS5D01G163300.1 | Wheat | nucleus | 60.38 | 56.88 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 48.85 | 52.26 |
| KRH24828 | Soybean | nucleus | 28.46 | 51.75 |
| KRH23040 | Soybean | plastid | 46.54 | 49.79 |
| Solyc10g086400.1.1 | Tomato | nucleus | 45.0 | 48.95 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 30.0 | 48.75 |
| Solyc11g073280.1.1 | Tomato | nucleus | 46.15 | 47.81 |
| Bra020273.1-P | Field mustard | nucleus | 40.0 | 47.71 |
| PGSC0003DMT400049444 | Potato | cytosol | 44.62 | 46.96 |
| CDY09236 | Canola | nucleus | 39.23 | 46.79 |
| KRH29829 | Soybean | nucleus | 43.85 | 46.15 |
| AT5G59950.5 | Thale cress | nucleus | 43.46 | 46.12 |
| CDX80213 | Canola | nucleus | 41.15 | 45.53 |
| Bra002519.1-P | Field mustard | nucleus | 41.54 | 45.38 |
| CDY31583 | Canola | nucleus | 41.54 | 45.19 |
| CDY10442 | Canola | nucleus | 47.31 | 44.09 |
| PGSC0003DMT400049442 | Potato | nucleus | 37.69 | 43.36 |
| CDX80828 | Canola | nucleus | 48.08 | 43.25 |
| Bra009581.1-P | Field mustard | nucleus | 45.77 | 43.12 |
| CDY40364 | Canola | nucleus | 45.77 | 42.96 |
| AT5G02530.1 | Thale cress | plastid | 48.08 | 42.81 |
| CDY55544 | Canola | nucleus | 47.31 | 42.12 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 34.23 | 41.01 |
| TraesCS4D01G205900.1 | Wheat | nucleus | 41.92 | 40.37 |
| KRH07006 | Soybean | cytosol | 15.38 | 37.04 |
| TraesCS2D01G240400.1 | Wheat | nucleus, plastid | 37.31 | 36.06 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 45.77 | 35.63 |
| KRH70494 | Soybean | nucleus | 35.77 | 34.96 |
| KRH75241 | Soybean | plastid | 17.69 | 34.59 |
| TraesCS2D01G059800.1 | Wheat | nucleus | 36.54 | 33.81 |
| KRH01617 | Soybean | nucleus | 25.0 | 32.02 |
| TraesCS7D01G207200.1 | Wheat | nucleus | 36.15 | 31.23 |
| OQU75650 | Sorghum | nucleus | 18.85 | 28.66 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G133000.1 | EnsemblPlantsGene:TraesCS4D01G133000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:FoP_C | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR19965 | PANTHER:PTHR19965:SF50 | PFAM:PF00076 | PFAM:PF13865 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 | TIGR:cd12680 | MapMan:16.11.1.2 | : |
Description
No Description!
Coordinates
chr4D:+:119802570..119804506
Molecular Weight (calculated)
27395.3 Da
IEP (calculated)
10.411
GRAVY (calculated)
-0.492
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTLDMSLD DIITKNKHHH RRGRHNPASA ASGGSAHPRR RFRSRAAARA VTAPYHQLSL PQQVPPAFGY VAQPMAMVTA PSALDSPTKL YISNLDYNVS
101: NEDIKELFSE MGEIQRYSIN YEKSGRSXGT AEVVFSARSS AVAALKKYNN VHLDGKPMKI EVIGTNIEAP APIPAIFALA PPPGNFSFPS KSGPGMGVSG
201: RGWSRGGGGF SGRSGGGFGG RGRGRTDRGR GKGGGGNLEL SAADLDADLD KYHSAAMQIS
101: NEDIKELFSE MGEIQRYSIN YEKSGRSXGT AEVVFSARSS AVAALKKYNN VHLDGKPMKI EVIGTNIEAP APIPAIFALA PPPGNFSFPS KSGPGMGVSG
201: RGWSRGGGGF SGRSGGGFGG RGRGRTDRGR GKGGGGNLEL SAADLDADLD KYHSAAMQIS
001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GRGGFMGRPR GGGFGGGNFR GGRGARGRGG RGSGGRGRDE NVSAEDLDAE LDKYHKEAME TS
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GRGGFMGRPR GGGFGGGNFR GGRGARGRGG RGSGGRGRDE NVSAEDLDAE LDKYHKEAME TS
Arabidopsis Description
ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.