Factsheet for Solyc10g086400.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 5

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g086400.1.1
Solyc11g073280.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	Solyc10g086400.1.1	AT5G02530.1	21798944
AT5G02530.1	Solyc11g073280.1.1	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049444	Potato	cytosol	92.05	89.07
PGSC0003DMT400049442	Potato	nucleus	74.9	79.2
GSMUA_Achr10P...	Banana	nucleus	63.18	63.18
GSMUA_Achr6P23530_001	Banana	nucleus	60.25	60.25
GSMUA_AchrUn_...	Banana	nucleus	59.41	59.41
Solyc11g073280.1.1	Tomato	nucleus	61.09	58.17
CDX80213	Canola	nucleus	56.07	57.02
Bra020273.1-P	Field mustard	nucleus	51.46	56.42
Bra002519.1-P	Field mustard	nucleus	56.07	56.3
CDY31583	Canola	nucleus	56.07	56.07
CDY09236	Canola	nucleus	51.05	55.96
Os11t0100200-00	Rice	nucleus	50.63	55.25
AT5G59950.5	Thale cress	nucleus	55.23	53.88
Os12t0100100-01	Rice	nucleus, plastid	50.63	53.07
EER92463	Sorghum	nucleus	53.97	50.19
Bra009581.1-P	Field mustard	nucleus	57.74	50.0
CDY40364	Canola	nucleus	57.74	49.82
Zm00001d028655_P001	Maize	extracellular, mitochondrion	52.72	49.8
GSMUA_Achr6P15310_001	Banana	nucleus	48.54	49.36
TraesCS4A01G099300.1	Wheat	nucleus	53.97	49.24
CDY10442	Canola	nucleus	57.32	49.1
Os03t0278300-02	Rice	nucleus	56.07	49.08
CDX80828	Canola	nucleus	58.58	48.44
AT5G02530.1	Thale cress	plastid	59.0	48.29
CDY55544	Canola	nucleus	59.0	48.29
TraesCS5A01G157900.1	Wheat	nucleus	55.65	48.19
TraesCS5D01G163300.1	Wheat	nucleus	55.65	48.19
TraesCS4B01G205000.1	Wheat	nucleus	54.39	48.15
HORVU5Hr1G049430.2	Barley	nucleus	56.49	48.04
TraesCS5B01G155800.1	Wheat	nucleus	55.65	48.01
TraesCS4D01G205900.1	Wheat	nucleus	53.56	47.41
TraesCS4A01G178200.1	Wheat	nucleus, plastid	48.95	45.0
TraesCS4D01G133000.1	Wheat	plastid	48.95	45.0
TraesCS4B01G138300.1	Wheat	nucleus, plastid	50.21	44.78
Zm00001d019234_P002	Maize	extracellular	43.1	41.37
Bra005728.1-P	Field mustard	nucleus, plastid	56.49	40.42
EER98238	Sorghum	nucleus, plastid	43.1	40.39
Zm00001d047794_P001	Maize	nucleus	41.84	39.37
HORVU4Hr1G024270.1	Barley	plastid	49.79	38.89
Zm00001d005179_P001	Maize	plastid	33.47	38.28
Solyc11g011130.1.1	Tomato	nucleus	45.19	38.16
Solyc04g014460.2.1	Tomato	nucleus	42.68	37.5
TraesCS2D01G240400.1	Wheat	nucleus, plastid	41.0	36.43
TraesCS2B01G261300.1	Wheat	nucleus, plastid	41.0	36.3
TraesCS2A01G244000.1	Wheat	nucleus	33.47	34.78
HORVU4Hr1G059090.4	Barley	plastid	49.37	33.33
OQU75650	Sorghum	nucleus	23.43	32.75
Os07t0237100-00	Rice	nucleus	41.42	29.12
HORVU2Hr1G056980.6	Barley	nucleus	28.45	21.73

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	ncoils:Coil	InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:K4D472
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF13865	PFscan:PS50102	PANTHER:PTHR19965	PANTHER:PTHR19965:SF51
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc10g086400.1
EnsemblPlants:Solyc10g086400.1.1	UniParc:UPI00027694CA	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:+:65230839..65235220

Molecular Weight (calculated)

26225.8 Da

IEP (calculated)

10.860

GRAVY (calculated)

-0.951

Length

239 amino acids

Sequence
(BLAST)

001: MSNLDVSLDD LIKRNKSSSS RNPRPRTTGF GSGPGPRRRF PNRATNRPAP YSVHAPESTW DHDMFADHNP SSVRRPGVSG IGTGIKLLIS NLDYAVSNED
101: IKELFLEAGD IKRYSIHYDK SGRSKGTAEV IFSRRRDAEA AIKRYNNVQL DGKPMKIELA GTNIAPPALP PIRNRLYGNP NPATRSQQRG GGFSRPRGGG
201: GRGSMRKDGG RGRGRGQNVS AEDLDAELEK YHAEAMQTN

Best Arabidopsis Sequence Match ( AT5G59950.5 )
(BLAST)

001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.