Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 4
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400049442 | |
| PGSC0003DMT400049444 | |
| PGSC0003DMT400085575 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G02530.1 | PGSC0003DMT400049442 | AT5G02530.1 | 21798944 |
| AT5G02530.1 | PGSC0003DMT400049444 | AT5G02530.1 | 21798944 |
| AT5G02530.1 | PGSC0003DMT400085575 | AT5G02530.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400049444 | Potato | cytosol | 88.5 | 80.97 |
| Solyc10g086400.1.1 | Tomato | nucleus | 79.2 | 74.9 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 51.77 | 53.92 |
| GSMUA_Achr10P... | Banana | nucleus | 53.98 | 51.05 |
| GSMUA_AchrUn_... | Banana | nucleus | 53.98 | 51.05 |
| GSMUA_Achr6P23530_001 | Banana | nucleus | 53.54 | 50.63 |
| GSMUA_Achr6P15310_001 | Banana | nucleus | 49.56 | 47.66 |
| Bra020273.1-P | Field mustard | nucleus | 45.58 | 47.25 |
| CDY31583 | Canola | nucleus | 49.56 | 46.86 |
| CDX80213 | Canola | nucleus | 48.67 | 46.81 |
| CDY09236 | Canola | nucleus | 45.13 | 46.79 |
| Bra002519.1-P | Field mustard | nucleus | 49.12 | 46.64 |
| AT5G59950.5 | Thale cress | nucleus | 50.44 | 46.53 |
| Os11t0100200-00 | Rice | nucleus | 43.36 | 44.75 |
| EER92463 | Sorghum | nucleus | 50.0 | 43.97 |
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 48.67 | 43.48 |
| Os12t0100100-01 | Rice | nucleus, plastid | 43.36 | 42.98 |
| Zm00001d047794_P001 | Maize | nucleus | 47.79 | 42.52 |
| Os03t0278300-02 | Rice | nucleus | 51.33 | 42.49 |
| CDY10442 | Canola | nucleus | 51.33 | 41.58 |
| Bra009581.1-P | Field mustard | nucleus | 50.44 | 41.3 |
| TraesCS4A01G099300.1 | Wheat | nucleus | 47.79 | 41.22 |
| CDY40364 | Canola | nucleus | 50.44 | 41.16 |
| TraesCS4B01G205000.1 | Wheat | nucleus | 48.23 | 40.37 |
| CDX80828 | Canola | nucleus | 50.88 | 39.79 |
| CDY55544 | Canola | nucleus | 51.33 | 39.73 |
| TraesCS4D01G205900.1 | Wheat | nucleus | 47.35 | 39.63 |
| AT5G02530.1 | Thale cress | plastid | 50.88 | 39.38 |
| HORVU5Hr1G049430.2 | Barley | nucleus | 48.67 | 39.15 |
| TraesCS5D01G163300.1 | Wheat | nucleus | 47.79 | 39.13 |
| TraesCS5A01G157900.1 | Wheat | nucleus | 47.79 | 39.13 |
| TraesCS5B01G155800.1 | Wheat | nucleus | 47.79 | 38.99 |
| TraesCS4A01G178200.1 | Wheat | nucleus, plastid | 43.81 | 38.08 |
| TraesCS4D01G133000.1 | Wheat | plastid | 43.36 | 37.69 |
| TraesCS4B01G138300.1 | Wheat | nucleus, plastid | 43.81 | 36.94 |
| Zm00001d019234_P002 | Maize | extracellular | 38.5 | 34.94 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 50.44 | 34.13 |
| EER98238 | Sorghum | nucleus, plastid | 38.5 | 34.12 |
| OQU75650 | Sorghum | nucleus | 25.66 | 33.92 |
| HORVU4Hr1G024270.1 | Barley | plastid | 44.25 | 32.68 |
| PGSC0003DMT400040562 | Potato | nucleus | 38.94 | 31.21 |
| Zm00001d005179_P001 | Maize | plastid | 28.32 | 30.62 |
| TraesCS2D01G240400.1 | Wheat | nucleus, plastid | 35.4 | 29.74 |
| TraesCS2B01G261300.1 | Wheat | nucleus, plastid | 35.4 | 29.63 |
| PGSC0003DMT400060737 | Potato | nucleus | 35.4 | 28.99 |
| HORVU4Hr1G059090.4 | Barley | plastid | 43.36 | 27.68 |
| TraesCS2A01G244000.1 | Wheat | nucleus | 26.99 | 26.52 |
| Os07t0237100-00 | Rice | nucleus | 36.73 | 24.41 |
| HORVU2Hr1G056980.6 | Barley | nucleus | 26.99 | 19.49 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400049442 | EnsemblPlantsGene:PGSC0003DMG401019209 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR19965 | PANTHER:PTHR19965:SF51 | PFAM:PF00076 | PFscan:PS50102 | PGSC:PGSC0003DMG401019209 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002969144 | UniProt:M1BNR5 | MapMan:16.11.1.2 | : |
Description
ALY protein [Source:PGSC_GENE;Acc:PGSC0003DMG401019209]
Coordinates
chr10:-:51376059..51377778
Molecular Weight (calculated)
24644.7 Da
IEP (calculated)
9.871
GRAVY (calculated)
-0.742
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNLDVSLDD LIKRNKSSTS RNPRPRTAGS GSGSGPGFDS GPGPRRRFPN RASNRPAPYS VHAPESTWDH DMFAEHAPSS ARGPGVSGIE TRIKLLISNL
101: DYGVSNEDIK ELFSEAGDIK RYSIHYDKSG RSKGTAEVIF SRRRDAEAAI KRYNNVQLDG KPMKIEFAGT NIAPPALPPI RNRLYGNPNP APRRYFSVVG
201: GSISSTSHPK SVGDFSDYCT QCDSIC
101: DYGVSNEDIK ELFSEAGDIK RYSIHYDKSG RSKGTAEVIF SRRRDAEAAI KRYNNVQLDG KPMKIEFAGT NIAPPALPPI RNRLYGNPNP APRRYFSVVG
201: GSISSTSHPK SVGDFSDYCT QCDSIC
001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRGG QGRGGQQRGG
201: GRGGGGRGGG GRGRRPGKGP AEKISAEDLD ADLDKYHSGD METN
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRGG QGRGGQQRGG
201: GRGGGGRGGG GRGRRPGKGP AEKISAEDLD ADLDKYHSGD METN
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.