Factsheet for TraesCS2B01G261300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G244000.1
TraesCS2B01G261300.1
TraesCS2D01G240400.1
TraesCS4A01G099300.1
TraesCS4A01G178200.1
TraesCS4B01G138300.1
TraesCS4B01G205000.1
TraesCS4D01G133000.1
TraesCS4D01G205900.1
TraesCS5A01G157900.1
TraesCS5B01G155800.1
TraesCS5D01G163300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	TraesCS2A01G244000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS2B01G261300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS2D01G240400.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4A01G099300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4A01G178200.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4B01G138300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4B01G205000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4D01G133000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4D01G205900.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5A01G157900.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5B01G155800.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5D01G163300.1	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G240400.1	Wheat	nucleus, plastid	98.52	98.88
TraesCS2A01G244000.1	Wheat	nucleus	83.33	97.83
EER98238	Sorghum	nucleus, plastid	65.56	69.41
Zm00001d019234_P002	Maize	extracellular	62.22	67.47
Zm00001d005179_P001	Maize	plastid	51.48	66.51
Os07t0237100-00	Rice	nucleus	69.26	55.0
KRH24828	Soybean	nucleus	26.3	49.65
HORVU2Hr1G056980.6	Barley	nucleus	54.07	46.65
VIT_13s0019g00640.t01	Wine grape	cytosol	26.3	44.38
VIT_06s0004g04340.t01	Wine grape	nucleus	38.52	42.8
KRH29829	Soybean	nucleus	38.52	42.11
Bra020273.1-P	Field mustard	nucleus	33.33	41.28
Solyc10g086400.1.1	Tomato	nucleus	36.3	41.0
CDY31583	Canola	nucleus	35.93	40.59
CDX80213	Canola	nucleus	35.19	40.43
CDY09236	Canola	nucleus	32.59	40.37
KRH23040	Soybean	plastid	36.3	40.33
PGSC0003DMT400049444	Potato	cytosol	36.67	40.08
AT5G59950.5	Thale cress	nucleus	36.3	40.0
Bra002519.1-P	Field mustard	nucleus	35.19	39.92
Solyc11g073280.1.1	Tomato	nucleus	37.04	39.84
TraesCS5B01G155800.1	Wheat	nucleus	40.0	38.99
CDX80828	Canola	nucleus	41.48	38.75
CDY10442	Canola	nucleus	40.0	38.71
CDY40364	Canola	nucleus	39.63	38.63
Bra009581.1-P	Field mustard	nucleus	39.26	38.41
CDY55544	Canola	nucleus	41.11	38.01
TraesCS4B01G205000.1	Wheat	nucleus	37.04	37.04
TraesCS4B01G138300.1	Wheat	nucleus, plastid	35.93	36.19
AT5G02530.1	Thale cress	plastid	38.89	35.96
PGSC0003DMT400085575	Potato	nucleus, plastid	28.89	35.94
PGSC0003DMT400049442	Potato	nucleus	29.63	35.4
TraesCS2B01G073800.1	Wheat	nucleus	35.56	34.41
Bra005728.1-P	Field mustard	nucleus, plastid	40.0	32.34
KRH70494	Soybean	nucleus	31.11	31.58
TraesCS7B01G111100.1	Wheat	nucleus	34.81	31.23
KRH75241	Soybean	plastid	15.19	30.83
KRH07006	Soybean	cytosol	11.85	29.63
KRH01617	Soybean	nucleus	20.74	27.59

Protein Annotations

EnsemblPlants:TraesCS2B01G261300.1	EnsemblPlantsGene:TraesCS2B01G261300	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:FoP_C	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR19965	PANTHER:PTHR19965:SF26	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SMART:SM01218	SUPFAM:SSF54928	TIGR:cd12680	MapMan:16.11.1.2	:	:

Description

No Description!

Coordinates

chr2B:-:333029229..333059293

Molecular Weight (calculated)

28489.4 Da

IEP (calculated)

9.755

GRAVY (calculated)

-0.680

Length

270 amino acids

Sequence
(BLAST)

001: MSSGLNMSLD DLIKQSKSRP KANPAFSSGP TRRAAPSART MPYPPSAPKA ATADSLYGVY SEHVAAMATS PPPPAVAGPQ ALETGTKLHI SNLDSSVTVE
101: DVQELFSEIG ELKRYSVNYD KDGKSQGSAE VVFARKVDAL DAIERYNGVL LDGKPMKIEL IGNKTEPHPT EPLMYNGTSS NYNAMPNSLL QRGGPRGPFH
201: GNGRSGGSGQ GGAGKRGMFQ GNVRPGNTVQ DGGGRGQGRA RGHDRSRVPT SAADLDAELE QYHAAAVKQK

Best Arabidopsis Sequence Match ( AT5G59950.3 )
(BLAST)

001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAPEST WGHDMFSDRS EDHRSGRSSA GIETGTKLYI SNLDYGVMNE
101: DIKELFAEVG ELKRYTVHFD RSGRSKGTAE VVYSRRGDAL AAVKKYNDVQ LDGKPMKIEI VGTNLQTAAA PSGRPANGNS NGAPWRGGQG RGGQQRGGGR
201: GGGGRGGGGR GRRPGKGPAE KISAEDLDAD LDKYHSGDME TN

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.