Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0278300-02 | |
| Os07t0237100-00 | |
| Os11t0100200-00 | |
| Os12t0100100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G02530.1 | Os03t0278300-02 | AT5G02530.1 | 21798944 |
| AT5G02530.1 | Os07t0237100-00 | AT5G02530.1 | 21798944 |
| AT5G02530.1 | Os11t0100200-00 | AT5G02530.1 | 21798944 |
| AT5G02530.1 | Os12t0100100-01 | AT5G02530.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER98238 | Sorghum | nucleus, plastid | 54.41 | 72.55 |
| TraesCS2B01G261300.1 | Wheat | nucleus, plastid | 55.0 | 69.26 |
| TraesCS2D01G240400.1 | Wheat | nucleus, plastid | 54.41 | 68.77 |
| Zm00001d019234_P002 | Maize | extracellular | 50.0 | 68.27 |
| TraesCS2A01G244000.1 | Wheat | nucleus | 46.18 | 68.26 |
| Zm00001d005179_P001 | Maize | plastid | 39.71 | 64.59 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 22.65 | 48.12 |
| KRH24828 | Soybean | nucleus | 19.41 | 46.15 |
| Os11t0100200-00 | Rice | nucleus | 29.41 | 45.66 |
| Bra020273.1-P | Field mustard | nucleus | 28.82 | 44.95 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 31.76 | 44.44 |
| CDY09236 | Canola | nucleus | 28.24 | 44.04 |
| CDY31583 | Canola | nucleus | 30.59 | 43.51 |
| Solyc11g073280.1.1 | Tomato | nucleus | 32.06 | 43.43 |
| Os12t0100100-01 | Rice | nucleus, plastid | 29.12 | 43.42 |
| CDX80213 | Canola | nucleus | 30.0 | 43.4 |
| KRH29829 | Soybean | nucleus | 31.47 | 43.32 |
| Bra002519.1-P | Field mustard | nucleus | 30.29 | 43.28 |
| AT5G59950.5 | Thale cress | nucleus | 30.88 | 42.86 |
| KRH23040 | Soybean | plastid | 30.59 | 42.8 |
| Solyc10g086400.1.1 | Tomato | nucleus | 29.12 | 41.42 |
| PGSC0003DMT400049444 | Potato | cytosol | 30.0 | 41.3 |
| CDX80828 | Canola | nucleus | 35.0 | 41.18 |
| CDY55544 | Canola | nucleus | 34.71 | 40.41 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 25.29 | 39.63 |
| Os03t0278300-02 | Rice | nucleus | 31.76 | 39.56 |
| CDY40364 | Canola | nucleus | 31.76 | 38.99 |
| Bra009581.1-P | Field mustard | nucleus | 31.47 | 38.77 |
| CDY10442 | Canola | nucleus | 31.76 | 38.71 |
| AT5G02530.1 | Thale cress | plastid | 32.94 | 38.36 |
| HORVU2Hr1G056980.6 | Barley | nucleus | 34.41 | 37.38 |
| PGSC0003DMT400049442 | Potato | nucleus | 24.41 | 36.73 |
| KRH07006 | Soybean | cytosol | 10.88 | 34.26 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 33.53 | 34.13 |
| KRH75241 | Soybean | plastid | 12.35 | 31.58 |
| Os08t0427900-01 | Rice | nucleus | 26.47 | 31.47 |
| KRH70494 | Soybean | nucleus | 24.41 | 31.2 |
| Os06t0256200-01 | Rice | nucleus | 26.76 | 30.95 |
| KRH01617 | Soybean | nucleus | 15.59 | 26.11 |
Protein Annotations
| MapMan:16.11.1.2 | Gene3D:3.30.70.330 | UniProt:A0A0P0X3W0 | ProteinID:BAT00747.1 | ncoils:Coil | InterPro:FoP_C |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os07g0237100 | EnsemblPlants:Os07t0237100-00 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR19965 |
| PANTHER:PTHR19965:SF26 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 |
| UniParc:UPI000393A4AD | SEG:seg | : | : | : | : |
Description
RNA recognition motif domain domain containing protein. (Os07t0237100-00)
Coordinates
chr7:-:7627634..7634860
Molecular Weight (calculated)
36146.8 Da
IEP (calculated)
10.868
GRAVY (calculated)
-0.741
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: SDGRPWNTKT GKKIQRKRIL SSHLTLSAHR RRRRRRHRRS AGSPSPQPAT MSSGLDMSLD DLIKQSKTKP KGGAPSSSGP TRRAAPPAAR AAPYPPAGPK
101: AAGGASPYGV YSEHVAAMAG VVPRPRPPPA AAAAAARSLE TGTKLHISNL DPGVTVDDVQ VLFLMGYIIF FPQELFSEIG ELKRYSVNYD KDGKSQGTAE
201: VVFARKVDAL EAIKRYDGVI LDGNPMKIDL IGNNSETSPM PPTAPLLYNP PFPNYPNSVP RRGGQRGQFH QGNGRPGNSQ GIGGGPRGFQ GSGRPGSGSQ
301: GGGGCSQGKT RGNERSRIQK SAADLDAELD QYHAEAVKEK
101: AAGGASPYGV YSEHVAAMAG VVPRPRPPPA AAAAAARSLE TGTKLHISNL DPGVTVDDVQ VLFLMGYIIF FPQELFSEIG ELKRYSVNYD KDGKSQGTAE
201: VVFARKVDAL EAIKRYDGVI LDGNPMKIDL IGNNSETSPM PPTAPLLYNP PFPNYPNSVP RRGGQRGQFH QGNGRPGNSQ GIGGGPRGFQ GSGRPGSGSQ
301: GGGGCSQGKT RGNERSRIQK SAADLDAELD QYHAEAVKEK
001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRTR ERRSTTRWWT
201: RRRWPRWWWS W
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRTR ERRSTTRWWT
201: RRRWPRWWWS W
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.