Factsheet for PGSC0003DMT400085575

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400049442
PGSC0003DMT400049444
PGSC0003DMT400085575

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	PGSC0003DMT400049442	AT5G02530.1	21798944
AT5G02530.1	PGSC0003DMT400049444	AT5G02530.1	21798944
AT5G02530.1	PGSC0003DMT400085575	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g073280.1.1	Tomato	nucleus	87.1	75.3
VIT_06s0004g04340.t01	Wine grape	nucleus	64.06	57.2
GSMUA_Achr10P...	Banana	nucleus	61.29	55.65
KRH29829	Soybean	nucleus	63.13	55.47
GSMUA_AchrUn_...	Banana	nucleus	59.91	54.39
KRH23040	Soybean	plastid	60.83	54.32
GSMUA_Achr6P23530_001	Banana	nucleus	59.45	53.97
GSMUA_Achr6P15310_001	Banana	nucleus	56.68	52.34
PGSC0003DMT400049442	Potato	nucleus	53.92	51.77
CDX80213	Canola	nucleus	53.0	48.94
Bra020273.1-P	Field mustard	nucleus	48.85	48.62
PGSC0003DMT400049444	Potato	cytosol	54.84	48.18
AT5G59950.5	Thale cress	nucleus	54.38	48.16
CDY31583	Canola	nucleus	53.0	48.12
Bra002519.1-P	Field mustard	nucleus	52.53	47.9
CDY09236	Canola	nucleus	47.93	47.71
KRH24828	Soybean	nucleus	30.41	46.15
EER92463	Sorghum	nucleus	54.38	45.91
Zm00001d028655_P001	Maize	extracellular, mitochondrion	53.46	45.85
Bra009581.1-P	Field mustard	nucleus	57.14	44.93
CDY40364	Canola	nucleus	57.14	44.77
CDY10442	Canola	nucleus	57.14	44.44
CDX80828	Canola	nucleus	58.53	43.94
CDY55544	Canola	nucleus	58.99	43.84
Zm00001d047794_P001	Maize	nucleus	51.15	43.7
KRH75241	Soybean	plastid	26.73	43.61
Os11t0100200-00	Rice	nucleus	43.78	43.38
Os03t0278300-02	Rice	nucleus	54.38	43.22
AT5G02530.1	Thale cress	plastid	58.06	43.15
Os12t0100100-01	Rice	nucleus, plastid	45.16	42.98
TraesCS4A01G099300.1	Wheat	nucleus	51.61	42.75
TraesCS4B01G205000.1	Wheat	nucleus	52.53	42.22
TraesCS4D01G205900.1	Wheat	nucleus	51.15	41.11
TraesCS5D01G163300.1	Wheat	nucleus	48.39	38.04
TraesCS5A01G157900.1	Wheat	nucleus	48.39	38.04
Bra005728.1-P	Field mustard	nucleus, plastid	58.53	38.02
TraesCS5B01G155800.1	Wheat	nucleus	48.39	37.91
HORVU5Hr1G049430.2	Barley	nucleus	48.85	37.72
TraesCS4A01G178200.1	Wheat	nucleus, plastid	41.94	35.0
TraesCS4B01G138300.1	Wheat	nucleus, plastid	42.4	34.33
TraesCS4D01G133000.1	Wheat	plastid	41.01	34.23
EER98238	Sorghum	nucleus, plastid	38.71	32.94
Zm00001d019234_P002	Maize	extracellular	37.79	32.93
PGSC0003DMT400040562	Potato	nucleus	42.4	32.62
OQU75650	Sorghum	nucleus	24.42	30.99
PGSC0003DMT400060737	Potato	nucleus	39.17	30.8
HORVU4Hr1G024270.1	Barley	plastid	42.86	30.39
TraesCS2D01G240400.1	Wheat	nucleus, plastid	35.94	29.0
TraesCS2B01G261300.1	Wheat	nucleus, plastid	35.94	28.89
Zm00001d005179_P001	Maize	plastid	27.19	28.23
HORVU4Hr1G059090.4	Barley	plastid	42.86	26.27
TraesCS2A01G244000.1	Wheat	nucleus	27.19	25.65
Os07t0237100-00	Rice	nucleus	39.63	25.29
HORVU2Hr1G056980.6	Barley	nucleus	24.42	16.93

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
InterPro:IPR000504	InterPro:IPR012677	UniProt:M1D9T2	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400035146
PGSC:PGSC0003DMG400035146	EnsemblPlants:PGSC0003DMT400085575	PFscan:PS50102	PANTHER:PTHR19965	PANTHER:PTHR19965:SF51	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002962169	SEG:seg	:

Description

ALY protein [Source:PGSC_GENE;Acc:PGSC0003DMG400035146]

Coordinates

chr11:+:45406621..45409456

Molecular Weight (calculated)

23499.9 Da

IEP (calculated)

10.206

GRAVY (calculated)

-0.386

Length

217 amino acids

Sequence
(BLAST)

001: MAEAALDMTL DDLIKKNKTG TGGKPRGRGC GAASTSSAGP SRRFPNRSAN RAAPYSTAKA PEASWNHDMF AADQAVAFGQ AGGRASSIET GTKLYISNLD
101: YGVSKEDIKE LFSEIGDLKR YAVHYDRSGR SKGTTEVVFS RRQDTLAGVK RFNNVQLDGK PMKIEIVGTN IVTPTAPFSN GAFGFGDTNG APRRYALLLT
201: KMLNWIKILF EIFYSAI

Best Arabidopsis Sequence Match ( AT5G59950.4 )
(BLAST)

001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRTR ERRSTTRWWT
201: RRRWPRWWWS W

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.