Factsheet for GSMUA_Achr6P15310_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr6P15310_001
GSMUA_Achr6P23530_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	GSMUA_Achr10P...	AT5G02530.1	21798944
AT5G02530.1	GSMUA_Achr6P15310_001	AT5G02530.1	21798944
AT5G02530.1	GSMUA_Achr6P23530_001	AT5G02530.1	21798944
AT5G02530.1	GSMUA_AchrUn_...	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	71.06	69.87
GSMUA_Achr6P23530_001	Banana	nucleus	68.09	66.95
GSMUA_AchrUn_...	Banana	nucleus	66.81	65.69
VIT_06s0004g04340.t01	Wine grape	nucleus	60.85	58.85
VIT_13s0019g00640.t01	Wine grape	cytosol	40.0	58.75
PGSC0003DMT400085575	Potato	nucleus, plastid	52.34	56.68
KRH23040	Soybean	plastid	55.74	53.91
Solyc11g073280.1.1	Tomato	nucleus	57.02	53.39
KRH29829	Soybean	nucleus	55.74	53.04
PGSC0003DMT400049442	Potato	nucleus	47.66	49.56
EER92463	Sorghum	nucleus	53.62	49.03
Zm00001d028655_P001	Maize	extracellular, mitochondrion	52.34	48.62
Solyc10g086400.1.1	Tomato	nucleus	49.36	48.54
CDX80213	Canola	nucleus	48.09	48.09
PGSC0003DMT400049444	Potato	cytosol	50.21	47.77
Bra020273.1-P	Field mustard	nucleus	44.26	47.71
Bra002519.1-P	Field mustard	nucleus	48.09	47.48
CDY31583	Canola	nucleus	48.09	47.28
Zm00001d047794_P001	Maize	nucleus	51.06	47.24
KRH24828	Soybean	nucleus	28.51	46.85
CDY09236	Canola	nucleus	43.4	46.79
AT5G59950.5	Thale cress	nucleus	47.66	45.71
KRH75241	Soybean	plastid	25.53	45.11
Os03t0278300-02	Rice	nucleus	51.06	43.96
Bra009581.1-P	Field mustard	nucleus	51.49	43.84
CDY40364	Canola	nucleus	51.49	43.68
AT5G02530.1	Thale cress	plastid	54.04	43.49
CDY10442	Canola	nucleus	51.49	43.37
TraesCS4A01G099300.1	Wheat	nucleus	46.81	41.98
CDX80828	Canola	nucleus	51.49	41.87
CDY55544	Canola	nucleus	51.91	41.78
TraesCS4B01G205000.1	Wheat	nucleus	47.23	41.11
TraesCS4D01G205900.1	Wheat	nucleus	46.38	40.37
KRH07006	Soybean	cytosol	18.3	39.81
Bra005728.1-P	Field mustard	nucleus, plastid	51.49	36.23
GSMUA_Achr5P05950_001	Banana	nucleus	41.28	35.53
GSMUA_Achr2P18730_001	Banana	nucleus	40.43	30.94
KRH70494	Soybean	nucleus	34.89	30.83
KRH01617	Soybean	nucleus	23.83	27.59
HORVU4Hr1G059090.4	Barley	plastid	40.43	26.84

Protein Annotations

EnsemblPlants:GSMUA_Achr6P15310_001	EnsemblPlants:GSMUA_Achr6T15310_001	EnsemblPlantsGene:GSMUA_Achr6G15310_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR19965	PANTHER:PTHR19965:SF51	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002964809	UniProt:M0T779	MapMan:16.11.1.2	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G15310_001]

Coordinates

chr6:-:10205423..10207826

Molecular Weight (calculated)

25439.3 Da

IEP (calculated)

11.171

GRAVY (calculated)

-0.489

Length

235 amino acids

Sequence
(BLAST)

001: MSSALDMSLD DIIKNNKKSA DGSRGRGRRS AAGPARRVSN RSANRPAPYS VGKAPDSAWQ HDMYAAQMGG LPAPAAGASA IETGSKLYIS NLEYGVSNED
101: IKELFSKVGD LKRYSINYDR SGRSKGTAEV VFARRVDALA AVKRYNNVLL DGKPMKIEII GTNIPTPAVV PHFTNGAFRS TNGSSKSFLI GTWALGRDPS
201: ASHHLRVTLF TKVQPRRSLE PRRQAPRASA RVKVV

Best Arabidopsis Sequence Match ( AT5G02530.1 )
(BLAST)

001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GRGGFMGRPR GGGFGGGNFR GGRGARGRGG RGSGGRGRDE NVSAEDLDAE LDKYHKEAME TS

Arabidopsis Description

ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.