Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 4
- golgi 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80213 | Canola | nucleus | 97.48 | 98.72 |
| CDY31583 | Canola | nucleus | 98.74 | 98.33 |
| Bra020273.1-P | Field mustard | nucleus | 81.51 | 88.99 |
| AT5G59950.5 | Thale cress | nucleus | 86.13 | 83.67 |
| KRH24828 | Soybean | nucleus | 38.24 | 63.64 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 64.71 | 63.37 |
| KRH23040 | Soybean | plastid | 63.87 | 62.55 |
| KRH29829 | Soybean | nucleus | 64.29 | 61.94 |
| GSMUA_Achr6P23530_001 | Banana | nucleus | 62.18 | 61.92 |
| GSMUA_AchrUn_... | Banana | nucleus | 61.76 | 61.51 |
| GSMUA_Achr10P... | Banana | nucleus | 61.34 | 61.09 |
| Solyc11g073280.1.1 | Tomato | nucleus | 60.92 | 57.77 |
| Solyc10g086400.1.1 | Tomato | nucleus | 56.3 | 56.07 |
| PGSC0003DMT400049444 | Potato | cytosol | 56.3 | 54.25 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 36.13 | 53.75 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 47.9 | 52.53 |
| Os03t0278300-02 | Rice | nucleus | 60.08 | 52.38 |
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 55.46 | 52.17 |
| Bra009581.1-P | Field mustard | nucleus | 60.08 | 51.81 |
| EER92463 | Sorghum | nucleus | 55.46 | 51.36 |
| Os11t0100200-00 | Rice | nucleus | 46.64 | 50.68 |
| Os12t0100100-01 | Rice | nucleus, plastid | 48.32 | 50.44 |
| TraesCS4A01G099300.1 | Wheat | nucleus | 55.04 | 50.0 |
| PGSC0003DMT400049442 | Potato | nucleus | 46.64 | 49.12 |
| TraesCS4B01G205000.1 | Wheat | nucleus | 55.46 | 48.89 |
| TraesCS4D01G205900.1 | Wheat | nucleus | 54.62 | 48.15 |
| GSMUA_Achr6P15310_001 | Banana | nucleus | 47.48 | 48.09 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 60.92 | 43.41 |
| TraesCS5A01G157900.1 | Wheat | nucleus | 50.0 | 43.12 |
| TraesCS5D01G163300.1 | Wheat | nucleus | 50.0 | 43.12 |
| TraesCS5B01G155800.1 | Wheat | nucleus | 50.0 | 42.96 |
| HORVU5Hr1G049430.2 | Barley | nucleus | 50.42 | 42.7 |
| KRH75241 | Soybean | plastid | 23.53 | 42.11 |
| TraesCS4A01G178200.1 | Wheat | nucleus, plastid | 45.8 | 41.92 |
| TraesCS4D01G133000.1 | Wheat | plastid | 45.38 | 41.54 |
| TraesCS4B01G138300.1 | Wheat | nucleus, plastid | 46.64 | 41.42 |
| Zm00001d019234_P002 | Maize | extracellular | 43.28 | 41.37 |
| Zm00001d047794_P001 | Maize | nucleus | 43.7 | 40.94 |
| EER98238 | Sorghum | nucleus, plastid | 43.28 | 40.39 |
| KRH07006 | Soybean | cytosol | 17.65 | 38.89 |
| Zm00001d005179_P001 | Maize | plastid | 32.77 | 37.32 |
| HORVU4Hr1G024270.1 | Barley | plastid | 46.22 | 35.95 |
| TraesCS2D01G240400.1 | Wheat | nucleus, plastid | 39.92 | 35.32 |
| TraesCS2B01G261300.1 | Wheat | nucleus, plastid | 39.92 | 35.19 |
| Bra028145.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 38.24 | 35.0 |
| KRH70494 | Soybean | nucleus | 38.66 | 34.59 |
| HORVU4Hr1G059090.4 | Barley | plastid | 50.84 | 34.18 |
| Bra004158.1-P | Field mustard | nucleus, plastid | 40.76 | 33.68 |
| TraesCS2A01G244000.1 | Wheat | nucleus | 32.35 | 33.48 |
| OQU75650 | Sorghum | nucleus | 23.11 | 32.16 |
| Os07t0237100-00 | Rice | nucleus | 43.28 | 30.29 |
| KRH01617 | Soybean | nucleus | 24.37 | 28.57 |
| HORVU2Hr1G056980.6 | Barley | nucleus | 25.21 | 19.17 |
Protein Annotations
| MapMan:16.11.1.2 | Gene3D:3.30.70.330 | EnsemblPlantsGene:Bra002519 | EnsemblPlants:Bra002519.1 | EnsemblPlants:Bra002519.1-P | InterPro:FoP_C |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 |
| UniProt:M4CE88 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF13865 | PFscan:PS50102 | PANTHER:PTHR19965 |
| PANTHER:PTHR19965:SF51 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 |
| UniParc:UPI0002543D08 | SEG:seg | : | : | : | : |
Description
AT5G59950 (E=7e-074) | RNA and export factor-binding protein, putative
Coordinates
chrA10:+:9072293..9073414
Molecular Weight (calculated)
25373.3 Da
IEP (calculated)
10.333
GRAVY (calculated)
-1.027
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTGLDMSLD DMIAKNRKSR GSGPARGSGS GSGPIRRNNP NRKSNRSAPY QSAKAPESTW EHDMYSDGSQ AFPSRSSAGI ETGTKLYISN LDYGVMNDDI
101: KELFAEVGEL KRYTVHFDRS GRSKGTAEVV YSRRGDAIAA VKKYNDVQLD GKPMKIEIVG NSNLQSASAP SGRHGNGNFN GASRRGGQGR GGPQRRGGGG
201: QGGRGRGRRS GKGPAEKVSA EDLDADLDKY HAGDMETN
101: KELFAEVGEL KRYTVHFDRS GRSKGTAEVV YSRRGDAIAA VKKYNDVQLD GKPMKIEIVG NSNLQSASAP SGRHGNGNFN GASRRGGQGR GGPQRRGGGG
201: QGGRGRGRRS GKGPAEKVSA EDLDADLDKY HAGDMETN
001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRGG QGRGGQQRGG
201: GRGGGGRGGG GRGRRPGKGP AEKISAEDLD ADLDKYHSGD METN
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRGG QGRGGQQRGG
201: GRGGGGRGGG GRGRRPGKGP AEKISAEDLD ADLDKYHSGD METN
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.