Factsheet for TraesCS4D01G205900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G244000.1
TraesCS2B01G261300.1
TraesCS2D01G240400.1
TraesCS4A01G099300.1
TraesCS4A01G178200.1
TraesCS4B01G138300.1
TraesCS4B01G205000.1
TraesCS4D01G133000.1
TraesCS4D01G205900.1
TraesCS5A01G157900.1
TraesCS5B01G155800.1
TraesCS5D01G163300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	TraesCS2A01G244000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS2B01G261300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS2D01G240400.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4A01G099300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4A01G178200.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4B01G138300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4B01G205000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4D01G133000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4D01G205900.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5A01G157900.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5B01G155800.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5D01G163300.1	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G099300.1	Wheat	nucleus	95.93	98.86
TraesCS4B01G205000.1	Wheat	nucleus	98.15	98.15
Os03t0278300-02	Rice	nucleus	76.67	75.82
EER92463	Sorghum	nucleus	70.74	74.32
Zm00001d028655_P001	Maize	extracellular, mitochondrion	68.15	72.73
HORVU4Hr1G059090.4	Barley	plastid	77.41	59.04
VIT_06s0004g04340.t01	Wine grape	nucleus	51.48	57.2
GSMUA_Achr10P...	Banana	nucleus	50.37	56.9
KRH23040	Soybean	plastid	51.11	56.79
Zm00001d047794_P001	Maize	nucleus	53.33	56.69
Bra020273.1-P	Field mustard	nucleus	44.81	55.5
CDX80213	Canola	nucleus	47.78	54.89
CDY31583	Canola	nucleus	48.52	54.81
GSMUA_Achr6P23530_001	Banana	nucleus	48.52	54.81
GSMUA_AchrUn_...	Banana	nucleus	48.52	54.81
Bra002519.1-P	Field mustard	nucleus	48.15	54.62
CDY09236	Canola	nucleus	44.07	54.59
KRH29829	Soybean	nucleus	49.63	54.25
Solyc11g073280.1.1	Tomato	nucleus	50.37	54.18
AT5G59950.5	Thale cress	nucleus	48.89	53.88
KRH24828	Soybean	nucleus	28.52	53.85
Solyc10g086400.1.1	Tomato	nucleus	47.41	53.56
PGSC0003DMT400049444	Potato	cytosol	48.52	53.04
PGSC0003DMT400085575	Potato	nucleus, plastid	41.11	51.15
VIT_13s0019g00640.t01	Wine grape	cytosol	29.26	49.38
PGSC0003DMT400049442	Potato	nucleus	39.63	47.35
Bra009581.1-P	Field mustard	nucleus	47.78	46.74
CDY40364	Canola	nucleus	47.78	46.57
GSMUA_Achr6P15310_001	Banana	nucleus	40.37	46.38
CDY10442	Canola	nucleus	47.04	45.52
CDX80828	Canola	nucleus	48.52	45.33
CDY55544	Canola	nucleus	48.89	45.21
TraesCS5D01G163300.1	Wheat	nucleus	45.56	44.57
AT5G02530.1	Thale cress	plastid	47.78	44.18
TraesCS4D01G133000.1	Wheat	plastid	40.37	41.92
KRH75241	Soybean	plastid	19.63	39.85
Bra005728.1-P	Field mustard	nucleus, plastid	47.41	38.32
KRH07006	Soybean	cytosol	14.81	37.04
TraesCS2D01G240400.1	Wheat	nucleus, plastid	36.3	36.43
TraesCS2D01G059800.1	Wheat	nucleus	37.04	35.59
TraesCS7D01G207200.1	Wheat	nucleus	39.63	35.55
KRH70494	Soybean	nucleus	30.74	31.2
KRH01617	Soybean	nucleus	21.85	29.06

Protein Annotations

EnsemblPlants:TraesCS4D01G205900.1	EnsemblPlantsGene:TraesCS4D01G205900	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:FoP_C	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR19965	PANTHER:PTHR19965:SF51	PFAM:PF00076	PFAM:PF13865	PFscan:PS50102	SEG:seg
SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928	TIGR:cd12680	MapMan:16.11.1.2	:

Description

No Description!

Coordinates

chr4D:+:353520294..353522276

Molecular Weight (calculated)

28279.1 Da

IEP (calculated)

10.965

GRAVY (calculated)

-0.789

Length

270 amino acids

Sequence
(BLAST)

001: MAESLDMSLE DIIKSNKKGN SSSGGGGRRR EGRLGSAAAG SGAAAAAAGG VRPNRRAFKR SGNRAAPYQP PKAPESAWQH DMYSDASARG GGGGRVSAIE
101: TGTKLLITNL DFGVSTEDLK ELFSELGDVK RCLIHYDRSG RSKGTAEVIF ARRGDAVAAL RKYNNVQLDG KPMKIEILGT NTPTAPAALP TNNGTYARNV
201: AKSAPRGVSA SLPQNRPRAR GGRGRRGGGG GSGSGGRRGK ERSQPRSAEE LDAELEKYHA QGTTPMQTTE

Best Arabidopsis Sequence Match ( AT5G59950.5 )
(BLAST)

001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.