CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80828
CDY10442
CDY40364
CDY55544

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	CDX80828	AT5G02530.1	21798944
AT5G02530.1	CDY10442	AT5G02530.1	21798944
AT5G02530.1	CDY40364	AT5G02530.1	21798944
AT5G02530.1	CDY55544	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55544	Canola	nucleus	97.58	96.58
CDY40364	Canola	nucleus	82.7	86.28
CDY10442	Canola	nucleus	83.05	86.02
AT5G02530.1	Thale cress	plastid	86.51	85.62
Bra005728.1-P	Field mustard	nucleus, plastid	94.12	81.44
KRH24828	Soybean	nucleus	33.56	67.83
VIT_06s0004g04340.t01	Wine grape	nucleus	56.06	66.67
GSMUA_Achr6P23530_001	Banana	nucleus	53.63	64.85
Solyc11g073280.1.1	Tomato	nucleus	56.06	64.54
GSMUA_Achr10P...	Banana	nucleus	53.29	64.44
CDX80213	Canola	nucleus	52.25	64.26
CDY09236	Canola	nucleus	48.1	63.76
GSMUA_AchrUn_...	Banana	nucleus	52.25	63.18
KRH29829	Soybean	nucleus	53.98	63.16
KRH23040	Soybean	plastid	52.94	62.96
CDY31583	Canola	nucleus	51.9	62.76
VIT_13s0019g00640.t01	Wine grape	cytosol	33.22	60.0
Solyc10g086400.1.1	Tomato	nucleus	48.44	58.58
PGSC0003DMT400085575	Potato	nucleus, plastid	43.94	58.53
Os11t0100200-00	Rice	nucleus	43.94	57.99
PGSC0003DMT400049444	Potato	cytosol	49.13	57.49
Os12t0100100-01	Rice	nucleus, plastid	45.33	57.46
EER92463	Sorghum	nucleus	47.75	53.7
Zm00001d028655_P001	Maize	extracellular, mitochondrion	46.37	52.96
Os03t0278300-02	Rice	nucleus	49.13	52.01
GSMUA_Achr6P15310_001	Banana	nucleus	41.87	51.49
PGSC0003DMT400049442	Potato	nucleus	39.79	50.88
TraesCS5D01G163300.1	Wheat	nucleus	48.1	50.36
TraesCS4A01G099300.1	Wheat	nucleus	45.33	50.0
HORVU5Hr1G049430.2	Barley	nucleus	48.44	49.82
TraesCS5A01G157900.1	Wheat	nucleus	47.4	49.64
TraesCS5B01G155800.1	Wheat	nucleus	47.4	49.46
TraesCS4B01G205000.1	Wheat	nucleus	45.67	48.89
TraesCS4D01G205900.1	Wheat	nucleus	45.33	48.52
TraesCS4A01G178200.1	Wheat	nucleus, plastid	43.25	48.08
TraesCS4D01G133000.1	Wheat	plastid	43.25	48.08
TraesCS4B01G138300.1	Wheat	nucleus, plastid	43.94	47.39
KRH75241	Soybean	plastid	21.8	47.37
Zm00001d019234_P002	Maize	extracellular	39.45	45.78
Zm00001d047794_P001	Maize	nucleus	39.45	44.88
EER98238	Sorghum	nucleus, plastid	39.45	44.71
Zm00001d005179_P001	Maize	plastid	31.83	44.02
KRH07006	Soybean	cytosol	16.26	43.52
TraesCS2D01G240400.1	Wheat	nucleus, plastid	38.75	41.64
HORVU4Hr1G024270.1	Barley	plastid	43.94	41.5
TraesCS2B01G261300.1	Wheat	nucleus, plastid	38.75	41.48
TraesCS2A01G244000.1	Wheat	nucleus	31.49	39.57
KRH70494	Soybean	nucleus	35.64	38.72
CDY01711	Canola	nucleus	38.75	38.23
CDY49635	Canola	nucleus, plastid	37.37	37.5
CDY07496	Canola	nucleus, plastid	37.37	37.5
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	32.53	36.15
Os07t0237100-00	Rice	nucleus	41.18	35.0
KRH01617	Soybean	nucleus	23.53	33.5
OQU75650	Sorghum	nucleus	19.72	33.33
HORVU4Hr1G059090.4	Barley	plastid	40.48	33.05
HORVU2Hr1G056980.6	Barley	nucleus	25.26	23.32

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	GO:A0A078D0D8	EnsemblPlants:CDX80828	ProteinID:CDX80828	ProteinID:CDX80828.1
InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00134222001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF13865	PFscan:PS50102
PANTHER:PTHR19965	PANTHER:PTHR19965:SF51	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM01218
SUPFAM:SSF54928	UniParc:UPI0004EDE449	SEG:seg	:	:	:

Description

BnaC03g00820D

Coordinates

chrLK031823:-:395928..397327

Molecular Weight (calculated)

30349.4 Da

IEP (calculated)

10.092

GRAVY (calculated)

-0.657

Length

289 amino acids

Sequence
(BLAST)

001: MAGGLDMSLD DLIKSNRKPT GSRGRGNGGG RGFGGGSSGP SRRFANRVGN RTAPYSRPMQ QQEAHDAMWA NDVFATDASV AAAFGHQSAG VGVGGSSIET
101: GTKLYISNLD YGVSNEDIKE LFSEVGELKR YGIHYDRSGR SKGTAEVVFS RRGDALAAVK RYNDVQLDGK LMKIEIVGTN LSAPAPPPML APVQIPFPSN
201: GLLGNFNENY NGNFNGNFRF VGRGRGGFMG RPRGGFGGGN FRGGRGARGG GGGGGGRGSG RGGRDEKVSA EDLDAELDKY HKEAMEETS

Best Arabidopsis Sequence Match ( AT5G02530.2 )
(BLAST)

001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GGFMGRPRGG GFGGGNFRGG RGARGRGGRG SGGRGRDENV SAEDLDAELD KYHKEAMETS

Arabidopsis Description

ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.