Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
23303719
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0278300-02 | |
| Os07t0237100-00 | |
| Os11t0100200-00 | |
| Os12t0100100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G02530.1 | Os03t0278300-02 | AT5G02530.1 | 21798944 |
| AT5G02530.1 | Os07t0237100-00 | AT5G02530.1 | 21798944 |
| AT5G02530.1 | Os11t0100200-00 | AT5G02530.1 | 21798944 |
| AT5G02530.1 | Os12t0100100-01 | AT5G02530.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92463 | Sorghum | nucleus | 78.39 | 83.27 |
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 75.09 | 81.03 |
| TraesCS4A01G099300.1 | Wheat | nucleus | 75.09 | 78.24 |
| TraesCS4B01G205000.1 | Wheat | nucleus | 76.56 | 77.41 |
| TraesCS4D01G205900.1 | Wheat | nucleus | 75.82 | 76.67 |
| Zm00001d047794_P001 | Maize | nucleus | 59.34 | 63.78 |
| KRH24828 | Soybean | nucleus | 32.23 | 61.54 |
| GSMUA_Achr10P... | Banana | nucleus | 53.85 | 61.51 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 54.58 | 61.32 |
| GSMUA_Achr6P23530_001 | Banana | nucleus | 53.48 | 61.09 |
| Bra020273.1-P | Field mustard | nucleus | 48.72 | 61.01 |
| KRH23040 | Soybean | plastid | 54.21 | 60.91 |
| CDY31583 | Canola | nucleus | 53.11 | 60.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.75 | 60.25 |
| CDY09236 | Canola | nucleus | 47.99 | 60.09 |
| Bra002519.1-P | Field mustard | nucleus | 52.38 | 60.08 |
| CDX80213 | Canola | nucleus | 51.28 | 59.57 |
| KRH29829 | Soybean | nucleus | 53.85 | 59.51 |
| Solyc11g073280.1.1 | Tomato | nucleus | 53.85 | 58.57 |
| AT5G59950.5 | Thale cress | nucleus | 52.38 | 58.37 |
| Solyc10g086400.1.1 | Tomato | nucleus | 49.08 | 56.07 |
| PGSC0003DMT400049444 | Potato | cytosol | 50.55 | 55.87 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 32.6 | 55.62 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 43.22 | 54.38 |
| Os12t0100100-01 | Rice | nucleus, plastid | 44.32 | 53.07 |
| Os11t0100200-00 | Rice | nucleus | 42.49 | 52.97 |
| PGSC0003DMT400049442 | Potato | nucleus | 42.49 | 51.33 |
| GSMUA_Achr6P15310_001 | Banana | nucleus | 43.96 | 51.06 |
| Bra009581.1-P | Field mustard | nucleus | 50.55 | 50.0 |
| HORVU4Hr1G059090.4 | Barley | plastid | 64.84 | 50.0 |
| CDY40364 | Canola | nucleus | 50.55 | 49.82 |
| CDY55544 | Canola | nucleus | 52.75 | 49.32 |
| CDX80828 | Canola | nucleus | 52.01 | 49.13 |
| AT5G02530.1 | Thale cress | plastid | 52.38 | 48.97 |
| CDY10442 | Canola | nucleus | 49.82 | 48.75 |
| KRH75241 | Soybean | plastid | 20.88 | 42.86 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 51.28 | 41.92 |
| KRH07006 | Soybean | cytosol | 16.12 | 40.74 |
| Os06t0256200-01 | Rice | nucleus | 41.39 | 38.44 |
| Os08t0427900-01 | Rice | nucleus | 38.83 | 37.06 |
| KRH70494 | Soybean | nucleus | 33.33 | 34.21 |
| Os07t0237100-00 | Rice | nucleus | 39.56 | 31.76 |
| KRH01617 | Soybean | nucleus | 23.08 | 31.03 |
Protein Annotations
| MapMan:16.11.1.2 | Gene3D:3.30.70.330 | EntrezGene:4332426 | ProteinID:ABF95281.1 | EMBL:AK060280 | EMBL:AK071965 |
| EMBL:AK119667 | ProteinID:BAS83540.1 | ProteinID:EAZ26457.1 | InterPro:FoP_C | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os03g0278300 |
| EnsemblPlants:Os03t0278300-02 | PFAM:PF00076 | PFAM:PF13865 | PFscan:PS50102 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF51 |
| UniProt:Q10N90 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 |
| UniParc:UPI0000DB4956 | RefSeq:XP_015630777.1 | SEG:seg | : | : | : |
Description
Similar to ALY protein. (Os03t0278300-01);Transcriptional coactivator-like protein. (Os03t0278300-02);Similar to THO complex subunit 4. (Os03t0278300-04)
Coordinates
chr3:-:9450641..9453006
Molecular Weight (calculated)
27703.4 Da
IEP (calculated)
10.649
GRAVY (calculated)
-0.779
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETLDMTLD DIIKNNKKAN PSSGRGRRGS AAGGGGGGGG GVGGGGGGGV GPTRRPFKRS GNRAGPYQPP KAPESAWQHD MYSDVAAGGG GGSGGGGRVS
101: AIETGTKLYI SNLDFGVSTE DIKELFSELG DLKKYVIHYD RSGRSKGTAE VVFARRGDAV AAVKKYNNVQ LDGKPMKIEI LGTNTPTAAA ALPANNGGYV
201: RNVAKSAPRG GPAGLPQGRP RPRGGGRRRG GGGGSGGPGG SGGRRGKERS QPKSAEELDA DLEKYHADAM QTN
101: AIETGTKLYI SNLDFGVSTE DIKELFSELG DLKKYVIHYD RSGRSKGTAE VVFARRGDAV AAVKKYNNVQ LDGKPMKIEI LGTNTPTAAA ALPANNGGYV
201: RNVAKSAPRG GPAGLPQGRP RPRGGGRRRG GGGGSGGPGG SGGRRGKERS QPKSAEELDA DLEKYHADAM QTN
001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRGG QGRGGQQRGG
201: GRGGGGRGGG GRGRRPGKGP AEKISAEDLD ADLDKYHSGD METN
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWRGG QGRGGQQRGG
201: GRGGGGRGGG GRGRRPGKGP AEKISAEDLD ADLDKYHSGD METN
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.