CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80828
CDY10442
CDY40364
CDY55544

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	CDX80828	AT5G02530.1	21798944
AT5G02530.1	CDY10442	AT5G02530.1	21798944
AT5G02530.1	CDY40364	AT5G02530.1	21798944
AT5G02530.1	CDY55544	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80828	Canola	nucleus	96.58	97.58
AT5G02530.1	Thale cress	plastid	87.67	87.67
CDY40364	Canola	nucleus	82.88	87.36
CDY10442	Canola	nucleus	83.22	87.1
Bra005728.1-P	Field mustard	nucleus, plastid	96.23	84.13
KRH24828	Soybean	nucleus	33.56	68.53
VIT_06s0004g04340.t01	Wine grape	nucleus	55.82	67.08
GSMUA_Achr6P23530_001	Banana	nucleus	53.42	65.27
Solyc11g073280.1.1	Tomato	nucleus	55.82	64.94
GSMUA_Achr10P...	Banana	nucleus	53.08	64.85
CDX80213	Canola	nucleus	51.37	63.83
GSMUA_AchrUn_...	Banana	nucleus	52.05	63.6
KRH29829	Soybean	nucleus	53.77	63.56
KRH23040	Soybean	plastid	52.74	63.37
CDY09236	Canola	nucleus	47.26	63.3
CDY31583	Canola	nucleus	51.03	62.34
VIT_13s0019g00640.t01	Wine grape	cytosol	32.53	59.38
Solyc10g086400.1.1	Tomato	nucleus	48.29	59.0
PGSC0003DMT400085575	Potato	nucleus, plastid	43.84	58.99
Os11t0100200-00	Rice	nucleus	43.84	58.45
Os12t0100100-01	Rice	nucleus, plastid	45.21	57.89
PGSC0003DMT400049444	Potato	cytosol	48.97	57.89
EER92463	Sorghum	nucleus	47.95	54.47
Zm00001d028655_P001	Maize	extracellular, mitochondrion	46.23	53.36
Os03t0278300-02	Rice	nucleus	49.32	52.75
GSMUA_Achr6P15310_001	Banana	nucleus	41.78	51.91
PGSC0003DMT400049442	Potato	nucleus	39.73	51.33
TraesCS4A01G099300.1	Wheat	nucleus	45.21	50.38
TraesCS5D01G163300.1	Wheat	nucleus	47.6	50.36
HORVU5Hr1G049430.2	Barley	nucleus	48.29	50.18
TraesCS5A01G157900.1	Wheat	nucleus	46.92	49.64
TraesCS5B01G155800.1	Wheat	nucleus	46.92	49.46
TraesCS4B01G205000.1	Wheat	nucleus	45.55	49.26
TraesCS4D01G205900.1	Wheat	nucleus	45.21	48.89
KRH75241	Soybean	plastid	21.58	47.37
TraesCS4D01G133000.1	Wheat	plastid	42.12	47.31
TraesCS4A01G178200.1	Wheat	nucleus, plastid	42.12	47.31
TraesCS4B01G138300.1	Wheat	nucleus, plastid	42.81	46.64
Zm00001d047794_P001	Maize	nucleus	39.38	45.28
Zm00001d019234_P002	Maize	extracellular	38.36	44.98
EER98238	Sorghum	nucleus, plastid	38.36	43.92
KRH07006	Soybean	cytosol	16.1	43.52
Zm00001d005179_P001	Maize	plastid	30.82	43.06
HORVU4Hr1G024270.1	Barley	plastid	43.49	41.5
TraesCS2D01G240400.1	Wheat	nucleus, plastid	38.01	41.26
TraesCS2B01G261300.1	Wheat	nucleus, plastid	38.01	41.11
TraesCS2A01G244000.1	Wheat	nucleus	30.82	39.13
KRH70494	Soybean	nucleus	34.93	38.35
CDY01711	Canola	nucleus	38.36	38.23
CDY49635	Canola	nucleus, plastid	36.99	37.5
CDY07496	Canola	nucleus, plastid	36.99	37.5
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	31.85	35.77
Os07t0237100-00	Rice	nucleus	40.41	34.71
OQU75650	Sorghum	nucleus	19.52	33.33
HORVU4Hr1G059090.4	Barley	plastid	40.41	33.33
KRH01617	Soybean	nucleus	22.95	33.0
HORVU2Hr1G056980.6	Barley	nucleus	24.66	23.0

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	GO:A0A078J0Z5	UniProt:A0A078J0Z5	EnsemblPlants:CDY55544	ProteinID:CDY55544
ProteinID:CDY55544.1	InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00017013001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR19965	PANTHER:PTHR19965:SF51	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM01218
SUPFAM:SSF54928	UniParc:UPI0004EDBDE4	SEG:seg	:	:	:

Description

BnaA03g54780DBnaA03g54780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0Z5]

Coordinates

chrLK033412:+:2018..3454

Molecular Weight (calculated)

30538.5 Da

IEP (calculated)

10.146

GRAVY (calculated)

-0.677

Length

292 amino acids

Sequence
(BLAST)

001: MAGGLDMSLD DLIKSNRKPT GSRGRGNGGA SSGGRGFGGG SSGPSRRFAN RVGNRTAPYS RPIQQQAHDA MWANDVFATD ASVAAAFGHQ SAGVGVGGSS
101: IETGTKLYIS NLDYGVSNED IKELFSEVGD LKRYGIHYDR SGRSKGTAEV VFSRRGDALA AVKRYNDVQL DGKLMKIEIV GTNLSAPAPP MLAPVQIPFP
201: SNGLLGNFNE NYNGNFNGNY NGNFRGRGRG GFMGRPRGGF GGGNFRGGRG ARGGGGGGGR GSGRGGRDEK VSAEDLDAEL DKYHKEAMEE TS

Best Arabidopsis Sequence Match ( AT5G02530.2 )
(BLAST)

001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GGFMGRPRGG GFGGGNFRGG RGARGRGGRG SGGRGRDENV SAEDLDAELD KYHKEAMETS

Arabidopsis Description

ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.