Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G056980.6 | |
| HORVU4Hr1G024270.1 | |
| HORVU4Hr1G059090.4 | |
| HORVU5Hr1G049430.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G163300.1 | Wheat | nucleus | 92.88 | 94.57 |
| TraesCS5A01G157900.1 | Wheat | nucleus | 92.88 | 94.57 |
| TraesCS5B01G155800.1 | Wheat | nucleus | 92.88 | 94.22 |
| Os11t0100200-00 | Rice | nucleus | 58.36 | 74.89 |
| Os12t0100100-01 | Rice | nucleus, plastid | 59.07 | 72.81 |
| KRH24828 | Soybean | nucleus | 32.03 | 62.94 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 51.6 | 59.67 |
| KRH23040 | Soybean | plastid | 49.47 | 57.2 |
| KRH29829 | Soybean | nucleus | 50.18 | 57.09 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 32.38 | 56.88 |
| Solyc10g086400.1.1 | Tomato | nucleus | 48.04 | 56.49 |
| Solyc11g073280.1.1 | Tomato | nucleus | 49.47 | 55.38 |
| PGSC0003DMT400049444 | Potato | cytosol | 46.98 | 53.44 |
| HORVU4Hr1G024270.1 | Barley | plastid | 57.65 | 52.94 |
| AT5G59950.5 | Thale cress | nucleus | 45.2 | 51.84 |
| Bra020273.1-P | Field mustard | nucleus | 40.21 | 51.83 |
| CDX80213 | Canola | nucleus | 42.7 | 51.06 |
| CDY09236 | Canola | nucleus | 39.5 | 50.92 |
| CDY10442 | Canola | nucleus | 50.53 | 50.9 |
| CDY31583 | Canola | nucleus | 43.06 | 50.63 |
| Bra002519.1-P | Field mustard | nucleus | 42.7 | 50.42 |
| Bra009581.1-P | Field mustard | nucleus | 49.47 | 50.36 |
| CDY40364 | Canola | nucleus | 49.11 | 49.82 |
| AT5G02530.1 | Thale cress | plastid | 51.25 | 49.32 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 37.72 | 48.85 |
| PGSC0003DMT400049442 | Potato | nucleus | 39.15 | 48.67 |
| CDX80828 | Canola | nucleus | 49.82 | 48.44 |
| CDY55544 | Canola | nucleus | 50.18 | 48.29 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 48.4 | 40.72 |
| KRH07006 | Soybean | cytosol | 15.3 | 39.81 |
| KRH75241 | Soybean | plastid | 17.44 | 36.84 |
| HORVU7Hr1G041520.2 | Barley | nucleus | 39.15 | 36.54 |
| KRH70494 | Soybean | nucleus | 33.45 | 35.34 |
| OQU75650 | Sorghum | nucleus | 20.64 | 33.92 |
| KRH01617 | Soybean | nucleus | 24.2 | 33.5 |
| HORVU4Hr1G059090.4 | Barley | plastid | 40.21 | 31.92 |
| HORVU2Hr1G011700.2 | Barley | nucleus | 38.08 | 31.85 |
| HORVU2Hr1G056980.6 | Barley | nucleus | 25.98 | 23.32 |
Protein Annotations
| MapMan:16.11.1.2 | Gene3D:3.30.70.330 | UniProt:A0A287R566 | InterPro:FoP_C | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:HORVU5Hr1G049430 | EnsemblPlants:HORVU5Hr1G049430.2 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF13865 | PFscan:PS50102 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF50 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 | UniParc:UPI000B47E476 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:384017402..384021635
Molecular Weight (calculated)
29509.4 Da
IEP (calculated)
10.553
GRAVY (calculated)
-0.676
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MADALDMSLD DLISKNKSSS QRGRGRRNQA SGSGSGSGSG SAPGGPAPAG RRFQARAATR AAAAPYHQFN FQHQPPPAAL AYAAQQAHAY AHAQTMALVA
101: PPSGVETGTK LYISNLDYNV SNEDIKELFA EVGDLKRYSI NYDKSGRSKG TAEVIFSRKS DALAALKRYN NVQLDGKPMK IEVIGTNIEA PPAPAIFTLN
201: TPTIGNFNIP SYSGRGRGGD SGRGWPRGRG GFGGRGAVGR GRGRGDVGRG RGRGGRGSQP VSANDLDADL DKYHSEAMQT S
101: PPSGVETGTK LYISNLDYNV SNEDIKELFA EVGDLKRYSI NYDKSGRSKG TAEVIFSRKS DALAALKRYN NVQLDGKPMK IEVIGTNIEA PPAPAIFTLN
201: TPTIGNFNIP SYSGRGRGGD SGRGWPRGRG GFGGRGAVGR GRGRGDVGRG RGRGGRGSQP VSANDLDADL DKYHSEAMQT S
001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GRGGFMGRPR GGGFGGGNFR GGRGARGRGG RGSGGRGRDE NVSAEDLDAE LDKYHKEAME TS
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GRGGFMGRPR GGGFGGGNFR GGRGARGRGG RGSGGRGRDE NVSAEDLDAE LDKYHKEAME TS
Arabidopsis Description
ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.