Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- golgi 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0004g04340.t01 | |
| VIT_13s0019g00640.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G02530.1 | VIT_06s0004g04340.t01 | AT5G02530.1 | 21798944 |
| AT5G02530.1 | VIT_13s0019g00640.t01 | AT5G02530.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH23040 | Soybean | plastid | 78.6 | 78.6 |
| GSMUA_Achr10P... | Banana | nucleus | 75.31 | 76.57 |
| GSMUA_Achr6P23530_001 | Banana | nucleus | 73.66 | 74.9 |
| KRH24828 | Soybean | nucleus | 43.62 | 74.13 |
| KRH29829 | Soybean | nucleus | 74.49 | 73.28 |
| GSMUA_AchrUn_... | Banana | nucleus | 71.19 | 72.38 |
| Solyc11g073280.1.1 | Tomato | nucleus | 73.25 | 70.92 |
| Bra020273.1-P | Field mustard | nucleus | 59.67 | 66.51 |
| CDY09236 | Canola | nucleus | 58.85 | 65.6 |
| AT5G59950.5 | Thale cress | nucleus | 65.84 | 65.31 |
| CDX80213 | Canola | nucleus | 62.96 | 65.11 |
| Bra002519.1-P | Field mustard | nucleus | 63.37 | 64.71 |
| CDY31583 | Canola | nucleus | 63.37 | 64.44 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 57.2 | 64.06 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 41.15 | 62.5 |
| GSMUA_Achr6P15310_001 | Banana | nucleus | 58.85 | 60.85 |
| EER92463 | Sorghum | nucleus | 62.96 | 59.53 |
| Os11t0100200-00 | Rice | nucleus | 53.09 | 58.9 |
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 60.91 | 58.5 |
| Os12t0100100-01 | Rice | nucleus, plastid | 54.73 | 58.33 |
| Bra009581.1-P | Field mustard | nucleus | 64.61 | 56.88 |
| CDY40364 | Canola | nucleus | 64.61 | 56.68 |
| CDY10442 | Canola | nucleus | 64.61 | 56.27 |
| AT5G02530.1 | Thale cress | plastid | 67.49 | 56.16 |
| CDX80828 | Canola | nucleus | 66.67 | 56.06 |
| CDY55544 | Canola | nucleus | 67.08 | 55.82 |
| Os03t0278300-02 | Rice | nucleus | 61.32 | 54.58 |
| TraesCS4A01G099300.1 | Wheat | nucleus | 57.2 | 53.05 |
| TraesCS4B01G205000.1 | Wheat | nucleus | 58.02 | 52.22 |
| TraesCS5A01G157900.1 | Wheat | nucleus | 58.85 | 51.81 |
| TraesCS5D01G163300.1 | Wheat | nucleus | 58.85 | 51.81 |
| TraesCS5B01G155800.1 | Wheat | nucleus | 58.85 | 51.62 |
| HORVU5Hr1G049430.2 | Barley | nucleus | 59.67 | 51.6 |
| TraesCS4D01G205900.1 | Wheat | nucleus | 57.2 | 51.48 |
| KRH75241 | Soybean | plastid | 27.98 | 51.13 |
| TraesCS4A01G178200.1 | Wheat | nucleus, plastid | 52.26 | 48.85 |
| TraesCS4D01G133000.1 | Wheat | plastid | 52.26 | 48.85 |
| TraesCS4B01G138300.1 | Wheat | nucleus, plastid | 53.09 | 48.13 |
| Zm00001d047794_P001 | Maize | nucleus | 50.21 | 48.03 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 65.02 | 47.31 |
| VIT_14s0006g01020.t01 | Wine grape | nucleus | 50.21 | 45.35 |
| Zm00001d019234_P002 | Maize | extracellular | 44.44 | 43.37 |
| HORVU4Hr1G024270.1 | Barley | plastid | 53.5 | 42.48 |
| EER98238 | Sorghum | nucleus, plastid | 44.44 | 42.35 |
| Zm00001d005179_P001 | Maize | plastid | 35.8 | 41.63 |
| TraesCS2B01G261300.1 | Wheat | nucleus, plastid | 42.8 | 38.52 |
| TraesCS2D01G240400.1 | Wheat | nucleus, plastid | 42.39 | 38.29 |
| OQU75650 | Sorghum | nucleus | 26.34 | 37.43 |
| TraesCS2A01G244000.1 | Wheat | nucleus | 34.57 | 36.52 |
| HORVU4Hr1G059090.4 | Barley | plastid | 49.79 | 34.18 |
| Os07t0237100-00 | Rice | nucleus | 44.44 | 31.76 |
| HORVU2Hr1G056980.6 | Barley | nucleus | 27.98 | 21.73 |
Protein Annotations
| EntrezGene:100257081 | wikigene:100257081 | MapMan:16.11.1.2 | Gene3D:3.30.70.330 | ProteinID:CBI16171 | ProteinID:CBI16171.3 |
| UniProt:D7SKJ4 | EMBL:FN594951 | InterPro:FoP_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100257081 | wikigene:LOC100257081 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF13865 | PFscan:PS50102 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF51 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 | TIGR:TC57594 | TIGR:TC70480 |
| UniParc:UPI00015C77CB | ArrayExpress:VIT_06s0004g04340 | EnsemblPlantsGene:VIT_06s0004g04340 | EnsemblPlants:VIT_06s0004g04340.t01 | unigene:Vvi.287 | RefSeq:XP_002284215 |
| RefSeq:XP_002284215.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:5316256..5323438
Molecular Weight (calculated)
25843.2 Da
IEP (calculated)
10.598
GRAVY (calculated)
-0.785
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNALDMSLD DLIKNNKRSG GGGNARGRGR GSGPGPARRL PNRGANRITP YSVSKAPETT WQHDMFADQA AAYPAQAGRT SAIETGTKLY ISNLDYGVSN
101: EDIKELFSEV GDLKRYSIHY DRSGRSKGTA EVVFSRRGDA VAAVKRYNNV QLDGKPMKIE IVGTNIATPA AVPPVTNGTF GNSNGGLRSA QGRVGSQGRP
201: RGGSGGRGFG RGRGRGRGRG EKVSAEDLDA DLEKYHSEAM QIN
101: EDIKELFSEV GDLKRYSIHY DRSGRSKGTA EVVFSRRGDA VAAVKRYNNV QLDGKPMKIE IVGTNIATPA AVPPVTNGTF GNSNGGLRSA QGRVGSQGRP
201: RGGSGGRGFG RGRGRGRGRG EKVSAEDLDA DLEKYHSEAM QIN
001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.