Factsheet for GSMUA_Achr2P18730_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P05950_001	Banana	nucleus	73.29	82.42
Zm00001d050357_P005	Maize	plasma membrane	56.35	64.31
EES15014	Sorghum	nucleus	56.68	63.97
VIT_14s0006g01020.t01	Wine grape	nucleus	55.7	63.57
Os08t0427900-01	Rice	nucleus	55.37	59.44
Solyc04g014460.2.1	Tomato	nucleus	52.12	58.82
TraesCS2A01G060200.1	Wheat	nucleus	53.09	58.63
TraesCS2B01G073800.1	Wheat	nucleus	53.09	58.42
TraesCS2D01G059800.1	Wheat	nucleus	53.42	58.36
PGSC0003DMT400060737	Potato	nucleus	52.12	57.97
KRG97938	Soybean	nucleus	56.03	57.72
KRH30937	Soybean	nucleus	55.37	57.05
Solyc11g011130.1.1	Tomato	nucleus	52.44	56.89
PGSC0003DMT400040562	Potato	nucleus	52.12	56.74
Os06t0256200-01	Rice	nucleus	52.77	55.1
TraesCS7A01G204100.1	Wheat	nucleus	51.79	52.82
EER89547	Sorghum	nucleus	52.77	52.77
GSMUA_Achr10P...	Banana	nucleus	41.04	52.72
TraesCS7D01G207200.1	Wheat	nucleus	51.47	52.49
TraesCS7B01G111100.1	Wheat	nucleus	51.14	52.16
GSMUA_Achr6P23530_001	Banana	nucleus	40.39	51.88
HORVU7Hr1G041520.2	Barley	nucleus	50.81	51.83
GSMUA_AchrUn_...	Banana	nucleus	40.07	51.46
CDY01711	Canola	nucleus	47.88	50.17
Zm00001d037352_P001	Maize	plasma membrane	49.51	49.67
AT5G37720.1	Thale cress	nucleus	46.25	49.31
HORVU2Hr1G011700.2	Barley	nucleus	53.75	49.11
CDY49635	Canola	nucleus, plastid	45.93	48.96
Bra004158.1-P	Field mustard	nucleus, plastid	45.93	48.96
CDY07496	Canola	nucleus, plastid	45.93	48.96
AT1G66260.1	Thale cress	nucleus	45.28	47.12
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	39.74	46.92
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	39.74	46.92
GSMUA_Achr6P15310_001	Banana	nucleus	30.94	40.43

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	ncoils:Coil	InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr2G18730_001	EnsemblPlants:GSMUA_Achr2P18730_001	EnsemblPlants:GSMUA_Achr2T18730_001	InterPro:IPR000504
InterPro:IPR012677	UniProt:M0S964	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF13865	PFscan:PS50102
PANTHER:PTHR19965	PANTHER:PTHR19965:SF33	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM01218
SUPFAM:SSF54928	UniParc:UPI0002957D55	SEG:seg	:	:	:

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G18730_001]

Coordinates

chr2:-:19031435..19039096

Molecular Weight (calculated)

33344.9 Da

IEP (calculated)

11.740

GRAVY (calculated)

-0.691

Length

307 amino acids

Sequence
(BLAST)

001: MATSMGMPRD DLIKNRTANQ RGRGRGRGQG QGRGHGRGDT FRGRGMGMLH RGSLSVNMRP SPYKIAKASL KMLLFILHSF SRTKGMIWRH DLFDDSIVAA
101: GISGIETGTK LYISNLDYGV SNEDIRELFS EVGDLKRYAV HYDRNGHPSG SAEVVYTRRS DAMAALKRYN NVQLDGKPMK IEVIGTNLGL PVTPRVNVVG
201: GPNGRGKRTV VMTPQFGRGA SSSFNRASGI TRGGFQRGRG RGHLNAISSG RGSGRGHLNA ISSGRGIGRG RASGRGRGRG RKQNLEKSAD ELDKELETYH
301: SEAMNTS

Best Arabidopsis Sequence Match ( AT5G37720.2 )
(BLAST)

001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: VRGGRGGRGP APTVSRRLPI HNQQGGGMRG GRGGFRARGR GNGGRGRGGG RGNGKKPVEK SAADLDKDLE SYHADAMNTS

Arabidopsis Description

ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.