Factsheet for TraesCS7A01G204100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G207200.1	Wheat	nucleus	98.34	98.34
TraesCS7B01G111100.1	Wheat	nucleus	98.34	98.34
HORVU7Hr1G041520.2	Barley	nucleus	95.35	95.35
Os06t0256200-01	Rice	nucleus	77.41	79.25
EER89547	Sorghum	nucleus	75.08	73.62
Zm00001d037352_P001	Maize	plasma membrane	70.76	69.61
VIT_14s0006g01020.t01	Wine grape	nucleus	48.51	54.28
GSMUA_Achr5P05950_001	Banana	nucleus	47.84	52.75
GSMUA_Achr2P18730_001	Banana	nucleus	52.82	51.79
KRG97938	Soybean	nucleus	50.83	51.34
Solyc11g011130.1.1	Tomato	nucleus	48.17	51.24
Solyc04g014460.2.1	Tomato	nucleus	46.18	51.1
PGSC0003DMT400040562	Potato	nucleus	47.51	50.71
KRH30937	Soybean	nucleus	50.17	50.67
PGSC0003DMT400060737	Potato	nucleus	46.18	50.36
TraesCS2A01G060200.1	Wheat	nucleus	45.18	48.92
AT5G37720.1	Thale cress	nucleus	42.19	44.1
CDY49635	Canola	nucleus, plastid	41.2	43.06
Bra004158.1-P	Field mustard	nucleus, plastid	41.2	43.06
CDY07496	Canola	nucleus, plastid	41.2	43.06
CDY01711	Canola	nucleus	41.2	42.32
AT1G66260.1	Thale cress	nucleus	40.53	41.36
TraesCS4A01G099300.1	Wheat	nucleus	34.88	40.08
TraesCS5A01G157900.1	Wheat	nucleus	36.21	39.49
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	33.55	38.85
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	33.55	38.85
TraesCS4A01G178200.1	Wheat	nucleus, plastid	31.56	36.54
TraesCS2A01G244000.1	Wheat	nucleus	26.25	34.35

Protein Annotations

EnsemblPlants:TraesCS7A01G204100.1	EnsemblPlantsGene:TraesCS7A01G204100	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:FoP_C	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR19965	PANTHER:PTHR19965:SF27	PFAM:PF00076	PFAM:PF13865	PFscan:PS50102	SEG:seg
SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928	MapMan:16.11.1.2	:	:

Description

No Description!

Coordinates

chr7A:-:166331853..166336173

Molecular Weight (calculated)

32798.9 Da

IEP (calculated)

11.650

GRAVY (calculated)

-0.784

Length

301 amino acids

Sequence
(BLAST)

001: MEAALNMSLD DMIKNRSGRG RGRGRGQRVG RGRGDGQRSG RGDGQRLGRG LGRGRGAGTF RGRGVPYQRP LGVNTRSSSY AIAKSFNKTK DFAWTHDRFE
101: DSMVAAGLPG IETGTKLYVS NLHYGVTKED LQELFSEMGH LKNCIVHYDN NRHPTGSAEV IFTRRSEAVQ ALKRYNNVRL DGKEMKIEMI GANLGLAAAP
201: APRVNVVSGA RGRGQREVVM SHPNGFGRGA TDSSSFLPGW KRNNGFAQRG GSVRGRGRGR GRSTFGRGRG RGVYVRKGLV KSADQLDKEL DTYHSGAMNV
301: D

Best Arabidopsis Sequence Match ( AT5G37720.2 )
(BLAST)

001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: VRGGRGGRGP APTVSRRLPI HNQQGGGMRG GRGGFRARGR GNGGRGRGGG RGNGKKPVEK SAADLDKDLE SYHADAMNTS

Arabidopsis Description

ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.